Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04137 and MIT1002_04138 are separated by 57 nucleotides MIT1002_04138 and MIT1002_04139 are separated by 3 nucleotides MIT1002_04139 and MIT1002_04140 are separated by 286 nucleotides
MIT1002_04137: MIT1002_04137 - hypothetical protein, at 3,258 to 3,992
_04137
MIT1002_04138: MIT1002_04138 - hypothetical protein, at 4,050 to 4,268
_04138
MIT1002_04139: MIT1002_04139 - hypothetical protein, at 4,272 to 4,784
_04139
MIT1002_04140: MIT1002_04140 - hypothetical protein, at 5,071 to 6,039
_04140
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3.059 kb on + strand at 3.064 kb on + strand at 3.064 kb on + strand at 3.122 kb on - strand at 3.125 kb on - strand at 3.142 kb on + strand at 3.186 kb on + strand at 3.187 kb on - strand at 3.196 kb on - strand at 3.202 kb on - strand at 3.217 kb on + strand at 3.217 kb on + strand at 3.225 kb on - strand at 3.225 kb on - strand at 3.225 kb on - strand at 3.225 kb on - strand at 3.230 kb on - strand at 3.257 kb on - strand at 3.325 kb on - strand at 3.333 kb on - strand, within MIT1002_04137 at 3.340 kb on - strand, within MIT1002_04137 at 3.401 kb on + strand, within MIT1002_04137 at 3.437 kb on + strand, within MIT1002_04137 at 3.437 kb on + strand, within MIT1002_04137 at 3.437 kb on - strand, within MIT1002_04137 at 3.445 kb on - strand, within MIT1002_04137 at 3.445 kb on - strand, within MIT1002_04137 at 3.445 kb on - strand, within MIT1002_04137 at 3.452 kb on + strand, within MIT1002_04137 at 3.455 kb on - strand, within MIT1002_04137 at 3.522 kb on + strand, within MIT1002_04137 at 3.522 kb on + strand, within MIT1002_04137 at 3.530 kb on - strand, within MIT1002_04137 at 3.557 kb on + strand, within MIT1002_04137 at 3.583 kb on - strand, within MIT1002_04137 at 3.583 kb on - strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.642 kb on - strand, within MIT1002_04137 at 3.642 kb on - strand, within MIT1002_04137 at 3.661 kb on - strand, within MIT1002_04137 at 3.663 kb on - strand, within MIT1002_04137 at 3.702 kb on + strand, within MIT1002_04137 at 3.710 kb on + strand, within MIT1002_04137 at 3.757 kb on - strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.809 kb on + strand, within MIT1002_04137 at 3.809 kb on + strand, within MIT1002_04137 at 3.809 kb on - strand, within MIT1002_04137 at 3.817 kb on + strand, within MIT1002_04137 at 3.817 kb on - strand, within MIT1002_04137 at 3.817 kb on - strand, within MIT1002_04137 at 3.817 kb on - strand, within MIT1002_04137 at 3.852 kb on + strand, within MIT1002_04137 at 3.906 kb on - strand, within MIT1002_04137 at 3.914 kb on - strand, within MIT1002_04137 at 3.915 kb on - strand, within MIT1002_04137 at 3.928 kb on + strand at 3.936 kb on - strand at 3.943 kb on + strand at 3.973 kb on + strand at 4.079 kb on - strand, within MIT1002_04138 at 4.107 kb on + strand, within MIT1002_04138 at 4.111 kb on - strand, within MIT1002_04138 at 4.115 kb on - strand, within MIT1002_04138 at 4.122 kb on - strand, within MIT1002_04138 at 4.122 kb on - strand, within MIT1002_04138 at 4.123 kb on - strand, within MIT1002_04138 at 4.133 kb on + strand, within MIT1002_04138 at 4.133 kb on - strand, within MIT1002_04138 at 4.140 kb on + strand, within MIT1002_04138 at 4.141 kb on - strand, within MIT1002_04138 at 4.141 kb on - strand, within MIT1002_04138 at 4.199 kb on - strand, within MIT1002_04138 at 4.226 kb on + strand, within MIT1002_04138 at 4.229 kb on + strand, within MIT1002_04138 at 4.229 kb on + strand, within MIT1002_04138 at 4.229 kb on + strand, within MIT1002_04138 at 4.231 kb on + strand, within MIT1002_04138 at 4.231 kb on + strand, within MIT1002_04138 at 4.231 kb on + strand, within MIT1002_04138 at 4.234 kb on - strand, within MIT1002_04138 at 4.237 kb on - strand, within MIT1002_04138 at 4.237 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.250 kb on + strand at 4.293 kb on - strand at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.418 kb on - strand, within MIT1002_04139 at 4.425 kb on + strand, within MIT1002_04139 at 4.430 kb on + strand, within MIT1002_04139 at 4.474 kb on + strand, within MIT1002_04139 at 4.485 kb on + strand, within MIT1002_04139 at 4.493 kb on - strand, within MIT1002_04139 at 4.506 kb on + strand, within MIT1002_04139 at 4.514 kb on - strand, within MIT1002_04139 at 4.535 kb on + strand, within MIT1002_04139 at 4.575 kb on - strand, within MIT1002_04139 at 4.591 kb on + strand, within MIT1002_04139 at 4.654 kb on + strand, within MIT1002_04139 at 4.752 kb on - strand at 4.752 kb on - strand at 4.820 kb on + strand at 4.827 kb on + strand at 4.828 kb on - strand at 4.828 kb on - strand at 4.843 kb on + strand at 4.868 kb on + strand at 4.868 kb on - strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.884 kb on - strand at 4.887 kb on + strand at 4.887 kb on + strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.895 kb on - strand at 4.911 kb on + strand at 4.956 kb on - strand at 4.980 kb on - strand at 4.982 kb on - strand at 5.013 kb on + strand at 5.020 kb on - strand at 5.021 kb on - strand at 5.036 kb on + strand at 5.056 kb on - strand at 5.069 kb on - strand at 5.078 kb on + strand at 5.078 kb on + strand at 5.086 kb on - strand at 5.141 kb on + strand at 5.205 kb on + strand, within MIT1002_04140
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 3,059 + -1.0 3,064 + +0.2 3,064 + -0.6 3,122 - +0.4 3,125 - +0.1 3,142 + -1.1 3,186 + +0.0 3,187 - -2.0 3,196 - -0.1 3,202 - +0.6 3,217 + -1.5 3,217 + +0.6 3,225 - -0.8 3,225 - -0.2 3,225 - -1.0 3,225 - +0.3 3,230 - +0.3 3,257 - -0.8 3,325 - -0.3 3,333 - MIT1002_04137 0.10 -0.1 3,340 - MIT1002_04137 0.11 -0.3 3,401 + MIT1002_04137 0.19 -1.6 3,437 + MIT1002_04137 0.24 +0.0 3,437 + MIT1002_04137 0.24 +1.0 3,437 - MIT1002_04137 0.24 +1.2 3,445 - MIT1002_04137 0.25 +0.1 3,445 - MIT1002_04137 0.25 +0.0 3,445 - MIT1002_04137 0.25 +2.4 3,452 + MIT1002_04137 0.26 -1.5 3,455 - MIT1002_04137 0.27 -1.4 3,522 + MIT1002_04137 0.36 +0.3 3,522 + MIT1002_04137 0.36 -0.0 3,530 - MIT1002_04137 0.37 +0.8 3,557 + MIT1002_04137 0.41 -1.8 3,583 - MIT1002_04137 0.44 -0.2 3,583 - MIT1002_04137 0.44 +0.4 3,634 + MIT1002_04137 0.51 -1.5 3,634 + MIT1002_04137 0.51 +0.1 3,634 + MIT1002_04137 0.51 -0.1 3,634 + MIT1002_04137 0.51 +0.8 3,634 + MIT1002_04137 0.51 -1.1 3,642 - MIT1002_04137 0.52 +0.5 3,642 - MIT1002_04137 0.52 -1.6 3,661 - MIT1002_04137 0.55 -1.7 3,663 - MIT1002_04137 0.55 -0.4 3,702 + MIT1002_04137 0.60 -0.3 3,710 + MIT1002_04137 0.61 +0.4 3,757 - MIT1002_04137 0.68 +1.1 3,801 + MIT1002_04137 0.74 -0.9 3,801 + MIT1002_04137 0.74 -0.4 3,801 + MIT1002_04137 0.74 +0.6 3,801 + MIT1002_04137 0.74 -0.0 3,809 + MIT1002_04137 0.75 -0.8 3,809 + MIT1002_04137 0.75 -0.8 3,809 - MIT1002_04137 0.75 -0.7 3,817 + MIT1002_04137 0.76 -1.4 3,817 - MIT1002_04137 0.76 -0.6 3,817 - MIT1002_04137 0.76 +1.2 3,817 - MIT1002_04137 0.76 +1.2 3,852 + MIT1002_04137 0.81 -0.0 3,906 - MIT1002_04137 0.88 -1.0 3,914 - MIT1002_04137 0.89 +0.6 3,915 - MIT1002_04137 0.89 +0.4 3,928 + -0.9 3,936 - -1.1 3,943 + -0.1 3,973 + -0.9 4,079 - MIT1002_04138 0.13 -1.2 4,107 + MIT1002_04138 0.26 -0.3 4,111 - MIT1002_04138 0.28 -0.7 4,115 - MIT1002_04138 0.30 -1.7 4,122 - MIT1002_04138 0.33 +0.4 4,122 - MIT1002_04138 0.33 +0.1 4,123 - MIT1002_04138 0.33 +0.6 4,133 + MIT1002_04138 0.38 -2.8 4,133 - MIT1002_04138 0.38 +2.4 4,140 + MIT1002_04138 0.41 +0.6 4,141 - MIT1002_04138 0.42 -0.5 4,141 - MIT1002_04138 0.42 +0.1 4,199 - MIT1002_04138 0.68 -0.2 4,226 + MIT1002_04138 0.80 -1.4 4,229 + MIT1002_04138 0.82 +0.0 4,229 + MIT1002_04138 0.82 -0.7 4,229 + MIT1002_04138 0.82 +0.4 4,231 + MIT1002_04138 0.83 -0.8 4,231 + MIT1002_04138 0.83 -1.5 4,231 + MIT1002_04138 0.83 +0.5 4,234 - MIT1002_04138 0.84 +0.6 4,237 - MIT1002_04138 0.85 +0.6 4,237 - MIT1002_04138 0.85 -0.0 4,239 - MIT1002_04138 0.86 -0.1 4,239 - MIT1002_04138 0.86 +0.7 4,239 - MIT1002_04138 0.86 +0.0 4,239 - MIT1002_04138 0.86 +0.2 4,239 - MIT1002_04138 0.86 +1.8 4,239 - MIT1002_04138 0.86 -0.2 4,239 - MIT1002_04138 0.86 +0.2 4,239 - MIT1002_04138 0.86 +1.1 4,250 + +0.3 4,293 - -1.4 4,396 + MIT1002_04139 0.24 +0.2 4,396 + MIT1002_04139 0.24 -0.1 4,396 + MIT1002_04139 0.24 -2.1 4,396 + MIT1002_04139 0.24 +0.3 4,396 + MIT1002_04139 0.24 +0.5 4,396 + MIT1002_04139 0.24 +1.0 4,396 + MIT1002_04139 0.24 -0.8 4,404 - MIT1002_04139 0.26 -0.1 4,404 - MIT1002_04139 0.26 -1.0 4,404 - MIT1002_04139 0.26 +1.6 4,404 - MIT1002_04139 0.26 +2.0 4,404 - MIT1002_04139 0.26 -0.6 4,418 - MIT1002_04139 0.28 -0.6 4,425 + MIT1002_04139 0.30 -0.6 4,430 + MIT1002_04139 0.31 +0.6 4,474 + MIT1002_04139 0.39 +0.6 4,485 + MIT1002_04139 0.42 -2.1 4,493 - MIT1002_04139 0.43 +0.2 4,506 + MIT1002_04139 0.46 -0.1 4,514 - MIT1002_04139 0.47 -0.3 4,535 + MIT1002_04139 0.51 -0.9 4,575 - MIT1002_04139 0.59 -1.3 4,591 + MIT1002_04139 0.62 -0.3 4,654 + MIT1002_04139 0.74 +0.3 4,752 - -0.8 4,752 - -0.1 4,820 + -1.5 4,827 + +0.2 4,828 - -1.5 4,828 - -0.1 4,843 + +0.9 4,868 + -2.5 4,868 - +1.2 4,882 + -0.5 4,882 + -1.0 4,882 + +0.5 4,882 + +0.5 4,884 - +0.1 4,887 + -0.6 4,887 + -1.5 4,890 - -0.2 4,890 - -2.0 4,890 - +1.7 4,890 - -0.6 4,890 - -0.4 4,890 - +0.4 4,890 - +1.3 4,895 - -0.9 4,911 + +0.9 4,956 - -1.8 4,980 - +0.2 4,982 - -0.6 5,013 + +1.7 5,020 - +1.9 5,021 - -0.8 5,036 + -0.2 5,056 - -1.4 5,069 - -0.3 5,078 + +0.5 5,078 + +0.4 5,086 - -1.4 5,141 + -0.4 5,205 + MIT1002_04140 0.14 +1.2
Or see this region's nucleotide sequence