Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04057

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
4,556,424	+		MIT1002_04056	0.27	+0.3
4,556,451	-		MIT1002_04056	0.30	+0.1
4,556,459	+		MIT1002_04056	0.31	-0.6
4,556,467	-		MIT1002_04056	0.31	-2.5
4,556,499	-		MIT1002_04056	0.34	-2.8
4,556,514	-		MIT1002_04056	0.36	+1.1
4,556,609	+		MIT1002_04056	0.44	-1.4
4,556,610	+		MIT1002_04056	0.44	-1.9
4,556,617	-		MIT1002_04056	0.45	+1.1
4,556,629	+		MIT1002_04056	0.46	+2.4
4,556,629	+		MIT1002_04056	0.46	-2.5
4,556,637	-		MIT1002_04056	0.47	-2.0
4,556,709	-		MIT1002_04056	0.53	+0.9
4,556,806	-		MIT1002_04056	0.62	-2.0
4,556,808	+		MIT1002_04056	0.62	-3.3
4,556,844	-		MIT1002_04056	0.66	-1.5
4,556,844	-		MIT1002_04056	0.66	-3.3
4,556,902	+		MIT1002_04056	0.71	-4.0
4,557,022	+		MIT1002_04056	0.82	-2.1
4,557,039	-		MIT1002_04056	0.83	-0.8
4,557,040	-		MIT1002_04056	0.83	-1.3
4,557,194	-				-2.7
4,557,262	-				-0.9
4,557,370	+				-1.9
4,557,370	+				+0.1
4,557,393	-				+0.1
4,557,423	+				-1.4
4,557,423	+				-0.8
4,557,576	-				-0.1
4,557,576	-				+0.7
4,557,576	-				+0.2
4,557,581	+				+2.1
4,557,665	-		MIT1002_04057	0.10	+2.6
4,557,707	+		MIT1002_04057	0.12	-1.7
4,557,707	+		MIT1002_04057	0.12	-0.0
4,557,708	-		MIT1002_04057	0.12	-0.4
4,557,713	-		MIT1002_04057	0.12	+1.9
4,557,752	+		MIT1002_04057	0.14	+1.1
4,557,766	+		MIT1002_04057	0.14	-0.6
4,557,852	-		MIT1002_04057	0.18	-0.9
4,557,892	+		MIT1002_04057	0.19	+1.6
4,557,900	-		MIT1002_04057	0.20	-0.8
4,557,974	-		MIT1002_04057	0.23	-0.5
4,557,991	-		MIT1002_04057	0.23	-1.6
4,558,011	-		MIT1002_04057	0.24	+0.1
4,558,052	+		MIT1002_04057	0.26	-1.4
4,558,094	+		MIT1002_04057	0.28	+0.0
4,558,094	+		MIT1002_04057	0.28	+0.4
4,558,122	-		MIT1002_04057	0.29	+0.4
4,558,127	+		MIT1002_04057	0.29	+0.7
4,558,159	+		MIT1002_04057	0.30	+1.1
4,558,446	+		MIT1002_04057	0.42	+1.9
4,558,510	-		MIT1002_04057	0.44	-0.6
4,558,528	+		MIT1002_04057	0.45	+0.1
4,558,583	-		MIT1002_04057	0.47	-0.1
4,558,718	-		MIT1002_04057	0.53	+0.7
4,558,718	-		MIT1002_04057	0.53	-0.4
4,558,740	+		MIT1002_04057	0.54	+0.8
4,558,748	-		MIT1002_04057	0.54	+0.3
4,558,790	-		MIT1002_04057	0.56	-0.4
4,558,801	-		MIT1002_04057	0.56	+0.4
4,558,829	-		MIT1002_04057	0.57	-0.7
4,558,856	+		MIT1002_04057	0.58	-1.8
4,558,856	+		MIT1002_04057	0.58	-0.1
4,558,864	-		MIT1002_04057	0.59	-1.7
4,558,864	-		MIT1002_04057	0.59	+0.6
4,558,917	+		MIT1002_04057	0.61	-1.1
4,558,917	-		MIT1002_04057	0.61	-1.1
4,558,991	+		MIT1002_04057	0.64	-0.5
4,558,994	-		MIT1002_04057	0.64	-0.6
4,558,998	+		MIT1002_04057	0.64	-0.0
4,559,012	+		MIT1002_04057	0.65	-0.8
4,559,012	-		MIT1002_04057	0.65	+0.6
4,559,057	+		MIT1002_04057	0.67	+0.6
4,559,104	+		MIT1002_04057	0.69	+0.4
4,559,112	-		MIT1002_04057	0.69	-1.6
4,559,121	+		MIT1002_04057	0.69	+0.9
4,559,121	-		MIT1002_04057	0.69	+1.2
4,559,129	-		MIT1002_04057	0.70	-1.2
4,559,179	-		MIT1002_04057	0.72	+0.4
4,559,179	-		MIT1002_04057	0.72	-1.3
4,559,197	+		MIT1002_04057	0.72	+1.2
4,559,200	-		MIT1002_04057	0.72	+0.3
4,559,233	-		MIT1002_04057	0.74	-1.9
4,559,233	-		MIT1002_04057	0.74	+1.8
4,559,249	+		MIT1002_04057	0.74	+0.4
4,559,364	-		MIT1002_04057	0.79	+0.0
4,559,364	-		MIT1002_04057	0.79	+0.8
4,559,389	+		MIT1002_04057	0.80	+0.3
4,559,460	+		MIT1002_04057	0.83	-0.3
4,559,468	-		MIT1002_04057	0.83	-0.3
4,559,605	+		MIT1002_04057	0.89	-2.7
4,559,636	-				-1.7
4,559,660	-				-2.5
4,559,660	-				+0.9
4,559,660	-				-0.2
4,559,686	-				-0.0
4,559,691	-				+1.7
4,559,707	-				-0.4
4,559,792	-				+0.6
4,559,799	+				-0.1
4,559,908	+				+1.1
4,559,916	-				+0.7
4,559,916	-				-0.8
4,559,935	-		MIT1002_04058	0.11	+0.6
4,559,955	+		MIT1002_04058	0.15	+0.7
4,559,965	+		MIT1002_04058	0.17	+0.8
4,559,965	+		MIT1002_04058	0.17	-0.6
4,559,978	-		MIT1002_04058	0.19	+2.4
4,559,980	+		MIT1002_04058	0.19	-1.3
4,559,983	-		MIT1002_04058	0.20	-0.1
4,560,019	+		MIT1002_04058	0.26	+1.4
4,560,024	+		MIT1002_04058	0.27	-0.9
4,560,027	-		MIT1002_04058	0.27	-2.3
4,560,049	+		MIT1002_04058	0.31	+0.9
4,560,065	-		MIT1002_04058	0.34	-0.1
4,560,082	+		MIT1002_04058	0.37	-1.6
4,560,171	+		MIT1002_04058	0.52	-1.1
4,560,179	-		MIT1002_04058	0.53	-0.9
4,560,207	+		MIT1002_04058	0.58	+0.3
4,560,207	+		MIT1002_04058	0.58	-0.8
4,560,216	-		MIT1002_04058	0.59	-0.6
4,560,271	+		MIT1002_04058	0.69	+2.0
4,560,316	-		MIT1002_04058	0.77	-0.1
4,560,374	+		MIT1002_04058	0.86	-0.5
4,560,381	+		MIT1002_04058	0.88	-0.8
4,560,389	-		MIT1002_04058	0.89	-1.8
4,560,400	+				+1.3
4,560,455	-				+1.0
4,560,583	-				+1.4
4,560,621	-				+0.3
4,560,653	-				-0.2
4,560,659	-				-1.5
4,560,681	+				+0.1
4,560,735	+				+0.0
4,560,816	+		MIT1002_04059	0.20	-0.7
4,560,816	+		MIT1002_04059	0.20	-1.3
4,560,826	+		MIT1002_04059	0.23	+0.3
4,560,846	-		MIT1002_04059	0.28	+0.7