Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04029

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
4,516,132	-		MIT1002_04028	0.18	-1.6
4,516,198	-		MIT1002_04028	0.24	+0.5
4,516,284	+		MIT1002_04028	0.31	+0.4
4,516,290	-		MIT1002_04028	0.31	+0.4
4,516,292	-		MIT1002_04028	0.32	-0.6
4,516,292	-		MIT1002_04028	0.32	+1.1
4,516,331	+		MIT1002_04028	0.35	-0.2
4,516,331	+		MIT1002_04028	0.35	-0.7
4,516,331	+		MIT1002_04028	0.35	-1.1
4,516,339	-		MIT1002_04028	0.35	-1.1
4,516,339	-		MIT1002_04028	0.35	+0.9
4,516,362	+		MIT1002_04028	0.37	-0.6
4,516,417	-		MIT1002_04028	0.42	-0.9
4,516,472	+		MIT1002_04028	0.46	+0.4
4,516,480	-		MIT1002_04028	0.47	-0.8
4,516,539	-		MIT1002_04028	0.52	-0.5
4,516,555	+		MIT1002_04028	0.53	-1.0
4,516,588	-		MIT1002_04028	0.56	+0.6
4,516,610	+		MIT1002_04028	0.58	-0.3
4,516,772	+		MIT1002_04028	0.71	-1.2
4,516,780	-		MIT1002_04028	0.72	-0.6
4,516,876	-		MIT1002_04028	0.79	-0.3
4,516,882	+		MIT1002_04028	0.80	-0.5
4,516,890	-		MIT1002_04028	0.81	-1.1
4,516,890	-		MIT1002_04028	0.81	-1.6
4,516,962	+		MIT1002_04028	0.87	-0.1
4,516,962	+		MIT1002_04028	0.87	-0.1
4,516,970	-		MIT1002_04028	0.87	+1.6
4,516,970	-		MIT1002_04028	0.87	-0.5
4,517,008	-				+3.4
4,517,015	+				-0.0
4,517,031	+				-0.8
4,517,044	-				-0.7
4,517,051	+				-0.3
4,517,074	+				+1.9
4,517,194	-		MIT1002_04029	0.12	+4.2
4,517,230	-		MIT1002_04029	0.18	-0.0
4,517,273	-		MIT1002_04029	0.26	-0.3
4,517,283	-		MIT1002_04029	0.28	+3.0
4,517,307	-		MIT1002_04029	0.33	-0.8
4,517,366	-		MIT1002_04029	0.44	+0.1
4,517,387	-		MIT1002_04029	0.47	-0.9
4,517,389	+		MIT1002_04029	0.48	-1.7
4,517,397	-		MIT1002_04029	0.49	+0.4
4,517,467	-		MIT1002_04029	0.62	+1.9
4,517,550	-		MIT1002_04029	0.78	+1.0
4,517,573	+		MIT1002_04029	0.82	+1.1
4,517,668	-				-2.1
4,517,735	+		MIT1002_04030	0.10	+0.9
4,517,735	+		MIT1002_04030	0.10	+2.9
4,517,743	+		MIT1002_04030	0.11	-0.3
4,517,771	+		MIT1002_04030	0.15	-0.6
4,517,780	+		MIT1002_04030	0.17	+1.0
4,517,780	+		MIT1002_04030	0.17	-0.0
4,517,788	-		MIT1002_04030	0.18	-0.2
4,517,788	-		MIT1002_04030	0.18	+0.9
4,517,851	+		MIT1002_04030	0.27	-1.4
4,517,891	-		MIT1002_04030	0.32	-0.1
4,517,891	-		MIT1002_04030	0.32	-0.1
4,517,953	+		MIT1002_04030	0.41	-0.5
4,517,960	-		MIT1002_04030	0.42	+0.3
4,518,022	-		MIT1002_04030	0.51	-1.2
4,518,042	+		MIT1002_04030	0.54	-0.1
4,518,088	+		MIT1002_04030	0.60	-0.3
4,518,166	-		MIT1002_04030	0.71	+0.4
4,518,179	-		MIT1002_04030	0.73	+0.7
4,518,202	-		MIT1002_04030	0.76	+0.6
4,518,205	+		MIT1002_04030	0.77	+0.0
4,518,205	+		MIT1002_04030	0.77	-0.6
4,518,225	-		MIT1002_04030	0.80	+1.7
4,518,256	-		MIT1002_04030	0.84	+1.7
4,518,292	+		MIT1002_04030	0.89	+0.2
4,518,292	+		MIT1002_04030	0.89	-0.8
4,518,292	+		MIT1002_04030	0.89	-0.7
4,518,292	+		MIT1002_04030	0.89	+2.0
4,518,293	+		MIT1002_04030	0.89	-0.4
4,518,300	-				+0.9
4,518,323	+				-1.4
4,518,501	+		MIT1002_04031	0.42	+0.9
4,518,509	-		MIT1002_04031	0.46	-0.5
4,518,536	+		MIT1002_04031	0.59	-1.6
4,518,546	+		MIT1002_04031	0.63	+0.6
4,518,552	-		MIT1002_04031	0.66	+0.6
4,518,590	+		MIT1002_04031	0.84	-0.7
4,518,623	+				+0.4
4,518,635	+				-0.3
4,518,635	+				-0.7
4,518,643	-				+0.1