Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03928

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
4,402,401	-		MIT1002_03926	0.23	+0.3
4,402,420	+		MIT1002_03926	0.28	+0.2
4,402,436	+		MIT1002_03926	0.33	-0.1
4,402,507	-		MIT1002_03926	0.52	-1.2
4,402,522	-		MIT1002_03926	0.56	+0.3
4,402,536	+		MIT1002_03926	0.59	-1.3
4,402,544	-		MIT1002_03926	0.62	-0.3
4,402,544	-		MIT1002_03926	0.62	-0.0
4,402,571	-		MIT1002_03926	0.69	+0.8
4,402,573	-		MIT1002_03926	0.69	+0.7
4,402,648	-		MIT1002_03926	0.90	+0.8
4,402,675	+				+0.3
4,402,675	+				+0.8
4,402,683	-				+1.4
4,402,683	-				+1.4
4,402,790	+		MIT1002_03927	0.17	+0.1
4,402,790	+		MIT1002_03927	0.17	-2.6
4,402,792	+		MIT1002_03927	0.17	+1.3
4,402,799	-		MIT1002_03927	0.18	+1.1
4,402,814	-		MIT1002_03927	0.21	-0.0
4,402,927	+		MIT1002_03927	0.39	+0.2
4,402,928	+		MIT1002_03927	0.39	+1.4
4,402,960	-		MIT1002_03927	0.44	+0.7
4,402,979	+		MIT1002_03927	0.47	-1.4
4,403,008	+		MIT1002_03927	0.52	-2.7
4,403,035	-		MIT1002_03927	0.56	-1.5
4,403,049	+		MIT1002_03927	0.59	-0.6
4,403,057	-		MIT1002_03927	0.60	+1.8
4,403,057	-		MIT1002_03927	0.60	+1.8
4,403,073	-		MIT1002_03927	0.63	+0.2
4,403,151	-		MIT1002_03927	0.75	-1.4
4,403,151	-		MIT1002_03927	0.75	+0.6
4,403,299	-				+0.0
4,403,304	-				-1.2
4,403,335	+				+0.5
4,403,350	+				+0.6
4,403,357	-				-0.2
4,403,474	+				-0.6
4,403,482	-				-1.1
4,403,490	-				-1.2
4,403,506	-		MIT1002_03928	0.10	-0.2
4,403,539	-		MIT1002_03928	0.12	-1.0
4,403,578	+		MIT1002_03928	0.14	-0.2
4,403,586	-		MIT1002_03928	0.14	+0.6
4,403,586	-		MIT1002_03928	0.14	+1.5
4,403,597	-		MIT1002_03928	0.15	+0.8
4,403,603	+		MIT1002_03928	0.15	-1.4
4,403,661	-		MIT1002_03928	0.18	-1.3
4,403,743	-		MIT1002_03928	0.22	+0.4
4,403,813	-		MIT1002_03928	0.26	+0.3
4,403,838	-		MIT1002_03928	0.27	-1.7
4,403,863	+		MIT1002_03928	0.28	-0.3
4,403,866	+		MIT1002_03928	0.28	-1.0
4,403,941	+		MIT1002_03928	0.32	-0.8
4,403,941	+		MIT1002_03928	0.32	-2.2
4,403,941	+		MIT1002_03928	0.32	+1.5
4,403,941	+		MIT1002_03928	0.32	+0.0
4,403,990	+		MIT1002_03928	0.35	+0.4
4,403,998	-		MIT1002_03928	0.35	-0.7
4,404,041	-		MIT1002_03928	0.37	-0.1
4,404,046	-		MIT1002_03928	0.38	+1.1
4,404,055	-		MIT1002_03928	0.38	-2.5
4,404,086	+		MIT1002_03928	0.40	-0.3
4,404,139	+		MIT1002_03928	0.42	-1.7
4,404,139	+		MIT1002_03928	0.42	+1.4
4,404,147	-		MIT1002_03928	0.43	-1.9
4,404,147	-		MIT1002_03928	0.43	+1.1
4,404,167	+		MIT1002_03928	0.44	+0.6
4,404,206	+		MIT1002_03928	0.46	+1.0
4,404,334	+		MIT1002_03928	0.52	-1.4
4,404,441	+		MIT1002_03928	0.57	-0.7
4,404,449	-		MIT1002_03928	0.58	+1.2
4,404,449	-		MIT1002_03928	0.58	+0.4
4,404,451	+		MIT1002_03928	0.58	+1.2
4,404,478	-		MIT1002_03928	0.59	+0.9
4,404,530	+		MIT1002_03928	0.62	+0.5
4,404,530	+		MIT1002_03928	0.62	+0.9
4,404,533	+		MIT1002_03928	0.62	-0.0
4,404,538	-		MIT1002_03928	0.62	+0.7
4,404,538	-		MIT1002_03928	0.62	+0.9
4,404,538	-		MIT1002_03928	0.62	+0.8
4,404,567	+		MIT1002_03928	0.64	-0.3
4,404,593	-		MIT1002_03928	0.65	-0.2
4,404,662	+		MIT1002_03928	0.68	-1.0
4,404,671	+		MIT1002_03928	0.69	+0.2
4,404,672	+		MIT1002_03928	0.69	-0.0
4,404,696	-		MIT1002_03928	0.70	+1.3
4,404,718	+		MIT1002_03928	0.71	+3.7
4,404,738	-		MIT1002_03928	0.72	-1.9
4,404,823	-		MIT1002_03928	0.77	-0.7
4,404,914	+		MIT1002_03928	0.81	-0.8
4,404,932	+		MIT1002_03928	0.82	+0.4
4,404,954	-		MIT1002_03928	0.83	+0.7
4,404,969	-		MIT1002_03928	0.84	-0.9
4,404,972	+		MIT1002_03928	0.84	+0.6
4,405,048	+		MIT1002_03928	0.88	-0.3
4,405,054	-		MIT1002_03928	0.88	-1.0
4,405,076	-		MIT1002_03928	0.89	-1.2
4,405,116	-				-0.1
4,405,148	+				-2.5
4,405,153	+				+1.0
4,405,156	-				-1.8
4,405,163	+				+2.2
4,405,163	-				-0.2
4,405,196	-				-1.9
4,405,196	-				-1.2
4,405,278	+				+1.1
4,405,309	-				+0.3
4,405,336	+				-0.1
4,405,383	-				-1.9
4,405,390	+		MIT1002_03929	0.11	+0.3
4,405,517	+		MIT1002_03929	0.24	-1.8
4,405,535	-		MIT1002_03929	0.26	-0.2
4,405,580	+		MIT1002_03929	0.31	+0.6
4,405,588	-		MIT1002_03929	0.32	+0.3
4,405,644	-		MIT1002_03929	0.37	-0.5
4,405,766	+		MIT1002_03929	0.50	-0.4
4,405,807	+		MIT1002_03929	0.55	-1.4
4,405,815	-		MIT1002_03929	0.56	+0.7
4,405,815	-		MIT1002_03929	0.56	+0.6
4,405,872	+		MIT1002_03929	0.62	-1.0
4,405,888	-		MIT1002_03929	0.63	+0.3
4,405,898	-		MIT1002_03929	0.64	+0.8
4,405,900	-		MIT1002_03929	0.65	+0.7
4,405,919	-		MIT1002_03929	0.67	-1.7
4,405,932	-		MIT1002_03929	0.68	-1.0
4,405,964	+		MIT1002_03929	0.71	+0.5
4,405,974	-		MIT1002_03929	0.73	+1.0
4,406,049	-		MIT1002_03929	0.80	+0.4
4,406,091	+		MIT1002_03929	0.85	-1.2
4,406,091	+		MIT1002_03929	0.85	-0.4
4,406,137	+		MIT1002_03929	0.90	-0.1
4,406,182	+				+0.7
4,406,190	-				-0.8
4,406,190	-				-1.0
4,406,195	-				-0.4
4,406,195	-				-0.1
4,406,226	-				-0.2
4,406,267	+				-0.7
4,406,285	-				-0.4