Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03881

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
4,345,507	+		MIT1002_03879	0.20	+0.7
4,345,530	-		MIT1002_03879	0.26	-1.1
4,345,547	+		MIT1002_03879	0.30	+0.8
4,345,555	-		MIT1002_03879	0.31	+0.1
4,345,555	-		MIT1002_03879	0.31	-0.7
4,345,573	+		MIT1002_03879	0.36	+1.4
4,345,585	+		MIT1002_03879	0.38	-0.3
4,345,593	-		MIT1002_03879	0.40	-1.1
4,345,607	-		MIT1002_03879	0.43	-0.5
4,345,607	-		MIT1002_03879	0.43	-0.3
4,345,636	-		MIT1002_03879	0.50	-2.1
4,345,690	+		MIT1002_03879	0.63	+1.4
4,345,690	+		MIT1002_03879	0.63	+1.2
4,345,710	+		MIT1002_03879	0.67	-0.4
4,345,710	+		MIT1002_03879	0.67	+2.4
4,345,714	-		MIT1002_03879	0.68	+1.6
4,345,847	+				+0.2
4,346,065	+		MIT1002_03880	0.31	+0.5
4,346,071	+		MIT1002_03880	0.32	-2.3
4,346,095	+		MIT1002_03880	0.38	+3.8
4,346,096	+		MIT1002_03880	0.38	-0.7
4,346,104	-		MIT1002_03880	0.40	+1.4
4,346,134	-		MIT1002_03880	0.47	+0.6
4,346,143	-		MIT1002_03880	0.49	+0.4
4,346,191	+		MIT1002_03880	0.59	+1.8
4,346,247	+		MIT1002_03880	0.72	+0.1
4,346,301	-		MIT1002_03880	0.84	+0.6
4,346,311	-		MIT1002_03880	0.86	-0.4
4,346,327	+		MIT1002_03880	0.90	-2.0
4,346,362	+				-2.2
4,346,377	-				+1.0
4,346,427	+				+1.1
4,346,427	+				-1.9
4,346,518	+				-0.2
4,346,553	-				+1.1
4,346,626	+		MIT1002_03881	0.22	+1.7
4,346,626	+		MIT1002_03881	0.22	-0.3
4,346,644	+		MIT1002_03881	0.25	-1.7
4,346,644	+		MIT1002_03881	0.25	-0.8
4,346,647	-		MIT1002_03881	0.26	-0.4
4,346,652	-		MIT1002_03881	0.26	-1.1
4,346,666	-		MIT1002_03881	0.29	-1.2
4,346,666	-		MIT1002_03881	0.29	-1.0
4,346,693	-		MIT1002_03881	0.34	-0.0
4,346,817	+		MIT1002_03881	0.56	+0.4
4,346,865	-		MIT1002_03881	0.64	-0.6
4,346,880	+		MIT1002_03881	0.67	+0.0
4,346,880	+		MIT1002_03881	0.67	-0.3
4,346,942	+		MIT1002_03881	0.78	+0.1
4,347,051	+				-0.2
4,347,051	+				+0.4
4,347,059	-				-1.2
4,347,061	+				+1.4
4,347,125	-				-1.4
4,347,159	-		MIT1002_03882	0.15	-0.7
4,347,307	+		MIT1002_03882	0.61	+1.8
4,347,307	+		MIT1002_03882	0.61	-1.4
4,347,315	+		MIT1002_03882	0.63	+0.3
4,347,315	+		MIT1002_03882	0.63	-0.3
4,347,315	-		MIT1002_03882	0.63	-2.0
4,347,345	+		MIT1002_03882	0.73	+0.6
4,347,353	-		MIT1002_03882	0.75	+1.0
4,347,353	-		MIT1002_03882	0.75	+0.2
4,347,353	-		MIT1002_03882	0.75	+0.5
4,347,353	-		MIT1002_03882	0.75	+0.2
4,347,371	+		MIT1002_03882	0.81	+0.5
4,347,408	-				-0.4
4,347,435	+				-0.9
4,347,443	-				-0.9
4,347,443	-				+0.4
4,347,443	-				+2.0
4,347,443	-				+2.1
4,347,446	+				-1.0
4,347,729	+				-0.7
4,347,769	-				-1.4
4,347,769	-				-0.2
4,347,769	-				+2.2
4,347,818	+				+0.2
4,347,818	+				-1.2
4,347,818	+				+1.6
4,347,826	-				+2.2
4,347,885	-		MIT1002_03883	0.15	+0.7
4,347,887	+		MIT1002_03883	0.16	+0.4
4,347,895	-		MIT1002_03883	0.17	-0.3
4,347,928	-		MIT1002_03883	0.23	-1.3
4,347,928	-		MIT1002_03883	0.23	+0.3
4,347,952	-		MIT1002_03883	0.28	+0.3
4,347,998	-		MIT1002_03883	0.37	-0.2
4,348,060	+		MIT1002_03883	0.48	-2.4