Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03745

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
4,184,694	-				-1.6
4,184,694	-				-0.3
4,184,694	-				-1.8
4,184,694	-				-0.4
4,184,722	+				+0.9
4,184,723	-				-0.4
4,184,786	+				-0.3
4,184,831	-				+0.8
4,184,834	+				-0.2
4,184,855	-		MIT1002_03744	0.13	+0.2
4,184,885	+		MIT1002_03744	0.18	+0.6
4,184,885	+		MIT1002_03744	0.18	-0.7
4,184,885	+		MIT1002_03744	0.18	-1.6
4,184,901	+		MIT1002_03744	0.20	+1.1
4,184,965	+		MIT1002_03744	0.31	-0.7
4,184,965	+		MIT1002_03744	0.31	+0.5
4,184,965	+		MIT1002_03744	0.31	-0.2
4,185,120	-		MIT1002_03744	0.55	+0.3
4,185,186	+		MIT1002_03744	0.66	+0.8
4,185,229	+		MIT1002_03744	0.73	-0.4
4,185,317	+		MIT1002_03744	0.87	+0.6
4,185,353	+				-0.5
4,185,367	-				+0.6
4,185,394	-				-1.4
4,185,400	-				+1.4
4,185,440	+				+0.4
4,185,459	-				-1.4
4,185,662	+				-1.0
4,185,669	+				+0.1
4,185,730	-				+0.1
4,185,730	-				-0.0
4,185,812	-				-0.1
4,185,917	+		MIT1002_03745	0.13	-0.5
4,185,963	+		MIT1002_03745	0.15	-0.8
4,186,021	-		MIT1002_03745	0.18	-0.6
4,186,052	-		MIT1002_03745	0.19	+0.2
4,186,062	-		MIT1002_03745	0.20	+0.8
4,186,085	+		MIT1002_03745	0.21	+1.3
4,186,136	+		MIT1002_03745	0.24	-0.4
4,186,140	+		MIT1002_03745	0.24	-0.5
4,186,148	+		MIT1002_03745	0.24	-0.2
4,186,148	-		MIT1002_03745	0.24	-1.4
4,186,155	+		MIT1002_03745	0.24	+0.8
4,186,163	-		MIT1002_03745	0.25	+0.2
4,186,217	+		MIT1002_03745	0.27	-1.4
4,186,217	+		MIT1002_03745	0.27	+0.6
4,186,217	+		MIT1002_03745	0.27	+0.6
4,186,217	+		MIT1002_03745	0.27	-0.8
4,186,217	+		MIT1002_03745	0.27	-1.8
4,186,217	+		MIT1002_03745	0.27	+1.0
4,186,217	+		MIT1002_03745	0.27	-0.3
4,186,217	+		MIT1002_03745	0.27	-0.1
4,186,218	+		MIT1002_03745	0.27	-2.1
4,186,218	+		MIT1002_03745	0.27	+0.4
4,186,225	-		MIT1002_03745	0.28	+0.8
4,186,225	-		MIT1002_03745	0.28	-0.1
4,186,226	-		MIT1002_03745	0.28	+0.2
4,186,226	-		MIT1002_03745	0.28	+1.3
4,186,265	+		MIT1002_03745	0.30	+0.5
4,186,288	+		MIT1002_03745	0.31	-1.7
4,186,330	-		MIT1002_03745	0.33	+1.1
4,186,357	-		MIT1002_03745	0.34	-0.4
4,186,459	-		MIT1002_03745	0.39	-1.9
4,186,466	+		MIT1002_03745	0.39	-0.8
4,186,626	-		MIT1002_03745	0.47	-0.0
4,186,633	-		MIT1002_03745	0.48	+1.1
4,186,680	+		MIT1002_03745	0.50	-0.1
4,186,723	-		MIT1002_03745	0.52	-1.1
4,186,736	-		MIT1002_03745	0.53	-1.4
4,186,776	+		MIT1002_03745	0.54	-0.4
4,186,779	-		MIT1002_03745	0.55	+0.5
4,186,789	-		MIT1002_03745	0.55	+0.5
4,186,837	+		MIT1002_03745	0.57	+1.1
4,186,928	+		MIT1002_03745	0.62	+2.7
4,186,941	+		MIT1002_03745	0.62	+0.1
4,186,941	+		MIT1002_03745	0.62	-0.2
4,186,962	+		MIT1002_03745	0.63	-1.6
4,186,970	-		MIT1002_03745	0.64	+0.7
4,186,976	+		MIT1002_03745	0.64	-2.0
4,186,984	-		MIT1002_03745	0.65	-0.5
4,187,055	+		MIT1002_03745	0.68	-0.5
4,187,063	-		MIT1002_03745	0.68	-1.6
4,187,068	-		MIT1002_03745	0.69	-0.7
4,187,068	-		MIT1002_03745	0.69	+0.7
4,187,072	-		MIT1002_03745	0.69	-0.6
4,187,085	-		MIT1002_03745	0.69	-0.5
4,187,103	-		MIT1002_03745	0.70	+0.9
4,187,117	-		MIT1002_03745	0.71	-0.7
4,187,295	-		MIT1002_03745	0.80	+0.1
4,187,297	+		MIT1002_03745	0.80	-0.6
4,187,316	-		MIT1002_03745	0.81	-1.7
4,187,328	+		MIT1002_03745	0.81	+1.0
4,187,337	+		MIT1002_03745	0.82	-0.6
4,187,356	+		MIT1002_03745	0.83	+0.3
4,187,448	-		MIT1002_03745	0.87	+2.4
4,187,515	+				-0.6
4,187,530	-				+1.0
4,187,576	+				+0.2
4,187,576	+				+0.5
4,187,584	-				-0.2
4,187,605	+				-1.3
4,187,619	+				-2.6
4,187,624	+				+0.1
4,187,632	-				-0.6
4,187,651	+				+0.9
4,187,660	-				-2.0
4,187,680	+				-0.7
4,187,680	+				-0.1
4,187,701	-				-0.1
4,187,758	+				+3.9
4,187,772	-				+1.5
4,187,806	+				-0.6
4,187,814	-				-1.1
4,187,814	-				+0.4
4,187,814	-				+1.3
4,187,816	-				-0.8
4,187,821	+				-0.3
4,187,870	+				+1.5
4,187,878	-				+0.8
4,187,888	-				-0.3
4,187,915	-		MIT1002_03746	0.11	-0.2
4,187,931	-		MIT1002_03746	0.13	+0.3
4,187,967	-		MIT1002_03746	0.18	-0.2
4,188,046	+		MIT1002_03746	0.30	+1.4
4,188,048	-		MIT1002_03746	0.30	-1.9
4,188,048	-		MIT1002_03746	0.30	-0.9
4,188,048	-		MIT1002_03746	0.30	+0.8
4,188,054	-		MIT1002_03746	0.31	+1.8
4,188,179	+		MIT1002_03746	0.49	-0.7
4,188,237	+		MIT1002_03746	0.57	-1.3
4,188,279	-		MIT1002_03746	0.63	-0.2
4,188,311	-		MIT1002_03746	0.68	-0.4
4,188,339	+		MIT1002_03746	0.72	-1.6
4,188,417	+		MIT1002_03746	0.83	-0.1
4,188,417	+		MIT1002_03746	0.83	+1.4
4,188,533	-				+1.4
4,188,634	+		MIT1002_03747	0.27	-0.0
4,188,634	+		MIT1002_03747	0.27	+1.4
4,188,634	+		MIT1002_03747	0.27	+1.1
4,188,634	+		MIT1002_03747	0.27	+0.4
4,188,639	+		MIT1002_03747	0.28	+0.1
4,188,642	-		MIT1002_03747	0.29	+3.1
4,188,642	-		MIT1002_03747	0.29	+1.4
4,188,642	-		MIT1002_03747	0.29	+1.6
4,188,642	-		MIT1002_03747	0.29	-0.8
4,188,642	-		MIT1002_03747	0.29	-1.1
4,188,642	-		MIT1002_03747	0.29	-0.1
4,188,657	-		MIT1002_03747	0.32	-0.2
4,188,695	+		MIT1002_03747	0.42	+1.1
4,188,702	+		MIT1002_03747	0.44	-0.2
4,188,711	-		MIT1002_03747	0.46	+0.8
4,188,713	+		MIT1002_03747	0.46	+2.1
4,188,714	-		MIT1002_03747	0.47	+0.6