Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03395

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
3,796,744	+		MIT1002_03394	0.37	-1.0
3,796,752	-		MIT1002_03394	0.38	-0.5
3,796,820	-		MIT1002_03394	0.42	-1.0
3,796,887	+		MIT1002_03394	0.47	+1.3
3,796,889	-		MIT1002_03394	0.47	-0.2
3,796,895	-		MIT1002_03394	0.47	-1.0
3,796,900	-		MIT1002_03394	0.47	+0.3
3,796,919	+		MIT1002_03394	0.49	+0.2
3,796,947	+		MIT1002_03394	0.51	+1.0
3,796,947	+		MIT1002_03394	0.51	-0.5
3,796,979	+		MIT1002_03394	0.53	-1.3
3,797,020	+		MIT1002_03394	0.55	-1.0
3,797,028	-		MIT1002_03394	0.56	+0.7
3,797,028	-		MIT1002_03394	0.56	+0.1
3,797,125	-		MIT1002_03394	0.62	+0.1
3,797,209	+		MIT1002_03394	0.68	-0.4
3,797,219	+		MIT1002_03394	0.69	+1.5
3,797,256	-		MIT1002_03394	0.71	+0.0
3,797,261	+		MIT1002_03394	0.71	-0.5
3,797,261	+		MIT1002_03394	0.71	-0.0
3,797,261	+		MIT1002_03394	0.71	-0.3
3,797,261	+		MIT1002_03394	0.71	+1.3
3,797,261	-		MIT1002_03394	0.71	-1.2
3,797,269	-		MIT1002_03394	0.72	+0.2
3,797,269	-		MIT1002_03394	0.72	+0.0
3,797,269	-		MIT1002_03394	0.72	-1.2
3,797,269	-		MIT1002_03394	0.72	+0.7
3,797,269	-		MIT1002_03394	0.72	-1.3
3,797,271	+		MIT1002_03394	0.72	-2.4
3,797,348	+		MIT1002_03394	0.77	+1.1
3,797,505	+		MIT1002_03394	0.88	+1.1
3,797,550	+				-0.0
3,797,558	-				-1.2
3,797,558	-				+0.8
3,797,558	-				+0.9
3,797,597	+				-0.6
3,797,644	+				+0.9
3,797,685	-				+1.1
3,797,695	-				+1.9
3,797,723	+				-2.3
3,797,756	-				-0.3
3,797,789	+				-0.1
3,797,813	+				-1.3
3,797,890	+				+1.8
3,797,996	+				-0.1
3,798,019	+				-0.9
3,798,104	+		MIT1002_03395	0.11	-0.7
3,798,104	+		MIT1002_03395	0.11	-0.1
3,798,104	+		MIT1002_03395	0.11	-0.3
3,798,104	+		MIT1002_03395	0.11	+2.5
3,798,112	-		MIT1002_03395	0.11	-0.8
3,798,112	-		MIT1002_03395	0.11	-1.1
3,798,112	-		MIT1002_03395	0.11	+0.9
3,798,365	-		MIT1002_03395	0.18	+0.2
3,798,388	+		MIT1002_03395	0.19	-1.7
3,798,411	+		MIT1002_03395	0.20	+0.4
3,798,418	+		MIT1002_03395	0.20	+0.4
3,798,462	-		MIT1002_03395	0.21	-0.7
3,798,504	+		MIT1002_03395	0.22	-0.8
3,798,582	-		MIT1002_03395	0.25	+0.9
3,798,583	-		MIT1002_03395	0.25	+0.3
3,798,593	-		MIT1002_03395	0.25	-0.6
3,798,612	+		MIT1002_03395	0.26	-0.2
3,798,639	+		MIT1002_03395	0.26	+0.5
3,798,759	+		MIT1002_03395	0.30	+0.2
3,798,759	+		MIT1002_03395	0.30	-0.6
3,798,810	+		MIT1002_03395	0.31	-0.7
3,798,831	+		MIT1002_03395	0.32	-1.4
3,798,831	+		MIT1002_03395	0.32	+0.9
3,798,831	+		MIT1002_03395	0.32	+0.0
3,798,839	-		MIT1002_03395	0.32	-1.5
3,798,839	-		MIT1002_03395	0.32	-0.3
3,798,839	-		MIT1002_03395	0.32	-1.0
3,798,839	-		MIT1002_03395	0.32	+1.4
3,798,850	+		MIT1002_03395	0.32	+1.3
3,798,892	-		MIT1002_03395	0.34	-0.3
3,798,967	-		MIT1002_03395	0.36	-1.0
3,798,978	+		MIT1002_03395	0.36	-2.1
3,798,985	-		MIT1002_03395	0.36	-0.3
3,799,036	+		MIT1002_03395	0.38	-0.1
3,799,127	-		MIT1002_03395	0.40	-0.4
3,799,156	-		MIT1002_03395	0.41	+2.3
3,799,158	+		MIT1002_03395	0.41	-0.2
3,799,214	-		MIT1002_03395	0.43	+0.4
3,799,226	+		MIT1002_03395	0.43	+0.2
3,799,234	-		MIT1002_03395	0.44	+0.7
3,799,257	+		MIT1002_03395	0.44	+1.3
3,799,317	-		MIT1002_03395	0.46	-2.2
3,799,329	+		MIT1002_03395	0.46	-1.4
3,799,339	+		MIT1002_03395	0.47	-0.8
3,799,339	+		MIT1002_03395	0.47	-0.9
3,799,344	-		MIT1002_03395	0.47	+0.1
3,799,385	-		MIT1002_03395	0.48	+0.9
3,799,385	-		MIT1002_03395	0.48	+1.4
3,799,387	+		MIT1002_03395	0.48	-0.8
3,799,435	-		MIT1002_03395	0.49	-2.2
3,799,455	+		MIT1002_03395	0.50	-0.6
3,799,455	+		MIT1002_03395	0.50	-0.1
3,799,462	+		MIT1002_03395	0.50	-0.8
3,799,463	-		MIT1002_03395	0.50	+0.5
3,799,468	+		MIT1002_03395	0.50	+0.4
3,799,476	-		MIT1002_03395	0.51	+0.8
3,799,478	+		MIT1002_03395	0.51	-0.7
3,799,493	+		MIT1002_03395	0.51	-1.7
3,799,496	-		MIT1002_03395	0.51	+0.8
3,799,512	+		MIT1002_03395	0.52	-1.9
3,799,517	+		MIT1002_03395	0.52	-1.2
3,799,520	-		MIT1002_03395	0.52	-2.4
3,799,520	-		MIT1002_03395	0.52	+2.3
3,799,520	-		MIT1002_03395	0.52	-0.7
3,799,520	-		MIT1002_03395	0.52	-2.0
3,799,544	-		MIT1002_03395	0.53	-1.8
3,799,558	-		MIT1002_03395	0.53	-2.0
3,799,567	+		MIT1002_03395	0.53	+1.3
3,799,675	-		MIT1002_03395	0.56	-0.1
3,799,896	+		MIT1002_03395	0.63	-3.0
3,799,931	+		MIT1002_03395	0.64	-1.7
3,799,996	+		MIT1002_03395	0.66	-0.3
3,799,996	+		MIT1002_03395	0.66	-1.3
3,800,013	-		MIT1002_03395	0.66	-0.7
3,800,150	-		MIT1002_03395	0.70	+0.3
3,800,157	-		MIT1002_03395	0.70	+0.1
3,800,183	+		MIT1002_03395	0.71	+0.5
3,800,258	-		MIT1002_03395	0.73	-2.1
3,800,268	-		MIT1002_03395	0.73	-0.2
3,800,292	+		MIT1002_03395	0.74	+2.3
3,800,302	-		MIT1002_03395	0.74	+0.4
3,800,310	-		MIT1002_03395	0.75	-0.3
3,800,328	+		MIT1002_03395	0.75	+0.7
3,800,353	+		MIT1002_03395	0.76	-1.3
3,800,416	+		MIT1002_03395	0.78	+0.2
3,800,424	-		MIT1002_03395	0.78	-0.3
3,800,431	-		MIT1002_03395	0.78	+0.5
3,800,481	+		MIT1002_03395	0.80	-1.2
3,800,502	+		MIT1002_03395	0.80	-0.8
3,800,596	+		MIT1002_03395	0.83	-0.5
3,800,623	-		MIT1002_03395	0.84	-0.2
3,800,682	+		MIT1002_03395	0.85	-1.4
3,800,687	+		MIT1002_03395	0.86	-0.9
3,800,690	-		MIT1002_03395	0.86	-0.3
3,800,690	-		MIT1002_03395	0.86	+0.1
3,800,690	-		MIT1002_03395	0.86	-0.4
3,800,695	-		MIT1002_03395	0.86	+0.1
3,800,843	+				-0.7
3,800,882	+				+0.1
3,800,882	-				-0.2
3,800,890	+				-1.2
3,800,903	-				-0.4
3,800,944	-				-0.6
3,800,944	-				-0.9
3,800,949	+				-1.4
3,800,957	-				+0.8
3,801,045	-				-0.1
3,801,073	+				-1.5
3,801,093	-				+8.6
3,801,128	+				-1.0
3,801,180	+				-1.4
3,801,188	-				-0.5
3,801,279	+				-1.1
3,801,279	+				+0.1
3,801,287	-				-0.1
3,801,287	-				-1.1
3,801,287	-				+0.8
3,801,287	-				-0.1
3,801,287	-				+1.1
3,801,287	-				-0.3
3,801,310	+				-0.9
3,801,401	+				+0.6
3,801,401	+				-1.2
3,801,401	+				-0.3
3,801,401	+				-0.6
3,801,409	-				-0.5
3,801,409	-				+0.3
3,801,409	-				+0.1
3,801,409	-				+1.1
3,801,409	-				-1.7
3,801,409	-				+0.0
3,801,458	+		MIT1002_03396	0.26	-0.1
3,801,458	+		MIT1002_03396	0.26	-1.1
3,801,476	-		MIT1002_03396	0.34	+2.0
3,801,476	-		MIT1002_03396	0.34	+0.4
3,801,480	+		MIT1002_03396	0.36	+0.3
3,801,545	-		MIT1002_03396	0.64	-0.2
3,801,570	-		MIT1002_03396	0.75	+1.3
3,801,593	+		MIT1002_03396	0.85	+0.9
3,801,595	+		MIT1002_03396	0.86	+0.4
3,801,603	-		MIT1002_03396	0.89	-1.1
3,801,654	+				-0.2
3,801,654	+				-1.4
3,801,654	+				-1.6
3,801,662	-				-0.8
3,801,703	+				+0.0
3,801,703	+				-1.5
3,801,704	-				-1.0
3,801,704	-				-2.1
3,801,784	+		MIT1002_03397	0.12	-0.7
3,801,789	+		MIT1002_03397	0.14	+0.9
3,801,801	+		MIT1002_03397	0.19	+0.3
3,801,801	+		MIT1002_03397	0.19	+1.0
3,801,801	+		MIT1002_03397	0.19	+0.3
3,801,801	+		MIT1002_03397	0.19	-0.5
3,801,801	+		MIT1002_03397	0.19	-0.9
3,801,801	+		MIT1002_03397	0.19	-1.8
3,801,801	+		MIT1002_03397	0.19	-0.3
3,801,801	+		MIT1002_03397	0.19	+1.3
3,801,801	+		MIT1002_03397	0.19	+1.2
3,801,808	+		MIT1002_03397	0.21	-1.2
3,801,809	-		MIT1002_03397	0.22	-1.9
3,801,809	-		MIT1002_03397	0.22	-1.5
3,801,809	-		MIT1002_03397	0.22	+0.9
3,801,809	-		MIT1002_03397	0.22	-0.8
3,801,809	-		MIT1002_03397	0.22	-1.3
3,801,809	-		MIT1002_03397	0.22	-0.9
3,801,809	-		MIT1002_03397	0.22	-0.2
3,801,810	-		MIT1002_03397	0.22	-2.8
3,801,845	+		MIT1002_03397	0.35	-1.4
3,801,845	+		MIT1002_03397	0.35	-1.4
3,801,845	+		MIT1002_03397	0.35	-0.0
3,802,126	+				-0.2