Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02216

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
2,474,170	+		MIT1002_02214	0.27	+0.5
2,474,190	+		MIT1002_02214	0.30	-1.1
2,474,192	+		MIT1002_02214	0.30	-1.0
2,474,198	-		MIT1002_02214	0.31	-0.6
2,474,200	+		MIT1002_02214	0.32	-0.1
2,474,200	+		MIT1002_02214	0.32	+1.8
2,474,208	-		MIT1002_02214	0.33	-0.1
2,474,422	+		MIT1002_02214	0.69	+0.3
2,474,430	-		MIT1002_02214	0.71	-0.7
2,474,430	-		MIT1002_02214	0.71	-1.8
2,474,438	+		MIT1002_02214	0.72	+0.9
2,474,438	+		MIT1002_02214	0.72	-1.6
2,474,438	+		MIT1002_02214	0.72	+0.1
2,474,443	+		MIT1002_02214	0.73	+0.8
2,474,446	-		MIT1002_02214	0.73	+0.2
2,474,448	+		MIT1002_02214	0.74	-1.7
2,474,449	-		MIT1002_02214	0.74	-1.6
2,474,475	+		MIT1002_02214	0.78	+1.4
2,474,483	-		MIT1002_02214	0.80	-0.6
2,474,483	-		MIT1002_02214	0.80	+0.1
2,474,483	-		MIT1002_02214	0.80	+1.0
2,474,505	+		MIT1002_02214	0.83	-0.8
2,474,508	+		MIT1002_02214	0.84	-0.7
2,474,516	-		MIT1002_02214	0.85	-0.3
2,474,542	+		MIT1002_02214	0.90	-0.8
2,474,544	+				-0.5
2,474,554	+				-0.3
2,474,554	+				+0.7
2,474,554	+				-0.8
2,474,554	+				-0.2
2,474,562	-				-2.0
2,474,562	-				+1.2
2,474,603	-				+0.2
2,474,605	-				+2.6
2,474,715	+				-1.5
2,474,715	-				-0.1
2,474,723	-		MIT1002_02215	0.10	-0.2
2,474,730	+		MIT1002_02215	0.12	+0.4
2,474,743	+		MIT1002_02215	0.15	+1.1
2,474,743	+		MIT1002_02215	0.15	+0.9
2,474,751	-		MIT1002_02215	0.17	+0.6
2,474,834	+		MIT1002_02215	0.37	-1.1
2,474,858	+		MIT1002_02215	0.42	-0.1
2,474,866	-		MIT1002_02215	0.44	-0.5
2,474,921	+		MIT1002_02215	0.57	-0.6
2,474,922	-		MIT1002_02215	0.57	-0.3
2,474,929	-		MIT1002_02215	0.59	-2.1
2,474,961	-		MIT1002_02215	0.67	-1.6
2,474,977	+		MIT1002_02215	0.70	+1.2
2,474,996	-		MIT1002_02215	0.75	-0.1
2,475,112	-				+0.3
2,475,235	+				+0.6
2,475,238	-				+0.5
2,475,351	-		MIT1002_02216	0.10	-2.0
2,475,351	-		MIT1002_02216	0.10	-2.4
2,475,364	+		MIT1002_02216	0.11	+0.6
2,475,413	+		MIT1002_02216	0.14	-2.3
2,475,413	+		MIT1002_02216	0.14	-0.1
2,475,413	+		MIT1002_02216	0.14	+0.7
2,475,427	-		MIT1002_02216	0.14	+1.5
2,475,449	+		MIT1002_02216	0.15	-0.7
2,475,545	+		MIT1002_02216	0.20	+0.8
2,475,638	+		MIT1002_02216	0.25	-0.1
2,475,638	+		MIT1002_02216	0.25	-2.5
2,475,644	+		MIT1002_02216	0.25	-0.7
2,475,646	-		MIT1002_02216	0.25	+1.6
2,475,646	-		MIT1002_02216	0.25	+1.0
2,475,646	-		MIT1002_02216	0.25	+0.4
2,475,658	+		MIT1002_02216	0.26	-0.7
2,475,765	-		MIT1002_02216	0.32	+0.8
2,475,772	+		MIT1002_02216	0.32	-0.1
2,475,882	+		MIT1002_02216	0.37	+0.4
2,475,882	+		MIT1002_02216	0.37	-0.9
2,475,882	+		MIT1002_02216	0.37	-0.4
2,475,882	+		MIT1002_02216	0.37	-2.5
2,475,890	-		MIT1002_02216	0.38	-0.2
2,475,890	-		MIT1002_02216	0.38	+0.9
2,475,890	-		MIT1002_02216	0.38	+0.7
2,475,890	-		MIT1002_02216	0.38	-0.3
2,476,004	-		MIT1002_02216	0.44	+2.1
2,476,015	+		MIT1002_02216	0.44	+0.6
2,476,015	+		MIT1002_02216	0.44	+0.4
2,476,127	+		MIT1002_02216	0.50	+0.6
2,476,214	+		MIT1002_02216	0.54	+0.6
2,476,214	+		MIT1002_02216	0.54	+0.0
2,476,216	+		MIT1002_02216	0.54	+12.3
2,476,216	+		MIT1002_02216	0.54	+0.3
2,476,222	-		MIT1002_02216	0.55	-0.6
2,476,222	-		MIT1002_02216	0.55	-1.5
2,476,224	-		MIT1002_02216	0.55	-0.7
2,476,230	-		MIT1002_02216	0.55	-1.1
2,476,584	-		MIT1002_02216	0.73	+0.1
2,476,603	-		MIT1002_02216	0.74	-2.1
2,476,619	-		MIT1002_02216	0.75	+1.7
2,476,678	-		MIT1002_02216	0.78	+0.3
2,476,917	-				-2.5
2,476,924	-				-0.4
2,477,114	+				+1.3
2,477,134	+				+0.7
2,477,137	-				-1.0
2,477,144	+				+1.2
2,477,144	+				+1.7
2,477,152	-				-0.1
2,477,152	-				-1.2
2,477,198	+				-0.4
2,477,206	-				-0.6
2,477,268	+		MIT1002_02217	0.11	-1.7
2,477,330	-		MIT1002_02217	0.19	-1.7
2,477,342	+		MIT1002_02217	0.21	-0.0
2,477,362	+		MIT1002_02217	0.23	+0.0
2,477,378	-		MIT1002_02217	0.25	-1.2
2,477,475	-		MIT1002_02217	0.39	-0.4
2,477,523	-		MIT1002_02217	0.45	-1.1
2,477,715	-		MIT1002_02217	0.71	-1.8
2,477,811	+		MIT1002_02217	0.84	-2.0
2,477,819	-		MIT1002_02217	0.85	-2.1
2,478,019	-				+0.5
2,478,094	-		MIT1002_02218	0.11	+1.7