Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01939

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
2,151,619	+				+0.5
2,151,619	+				-0.9
2,151,621	-				-0.2
2,151,678	+				+0.3
2,151,724	+		MIT1002_01938	0.12	+1.8
2,151,725	+		MIT1002_01938	0.12	-1.7
2,151,728	+		MIT1002_01938	0.12	+2.4
2,151,736	-		MIT1002_01938	0.13	+1.5
2,151,793	-		MIT1002_01938	0.20	-0.2
2,151,893	-		MIT1002_01938	0.31	-0.3
2,151,929	+		MIT1002_01938	0.35	-0.7
2,151,984	+		MIT1002_01938	0.42	-0.1
2,151,991	+		MIT1002_01938	0.43	-0.1
2,151,992	-		MIT1002_01938	0.43	+1.5
2,151,992	-		MIT1002_01938	0.43	+0.6
2,152,004	-		MIT1002_01938	0.44	-1.2
2,152,011	-		MIT1002_01938	0.45	-1.3
2,152,051	+		MIT1002_01938	0.50	-2.3
2,152,073	-		MIT1002_01938	0.52	-0.4
2,152,097	+		MIT1002_01938	0.55	-0.1
2,152,119	+		MIT1002_01938	0.57	-1.2
2,152,121	+		MIT1002_01938	0.58	-1.9
2,152,180	-		MIT1002_01938	0.64	-0.3
2,152,220	+		MIT1002_01938	0.69	+4.0
2,152,368	-		MIT1002_01938	0.86	-0.2
2,152,418	+				+1.1
2,152,510	-				+1.4
2,152,526	-				-1.3
2,152,540	+				+0.1
2,152,540	+				-0.5
2,152,540	+				+1.4
2,152,540	+				+0.5
2,152,540	+				+0.5
2,152,540	+				-1.9
2,152,548	-				-0.2
2,152,548	-				-1.3
2,152,586	+				-2.8
2,152,588	+				-1.0
2,152,588	+				-1.8
2,152,596	-				-0.7
2,152,596	-				-1.3
2,152,596	-				+0.3
2,152,596	-				+0.1
2,152,690	+		MIT1002_01939	0.17	+0.6
2,152,780	+		MIT1002_01939	0.35	-1.3
2,152,781	-		MIT1002_01939	0.36	+0.1
2,152,781	-		MIT1002_01939	0.36	-0.3
2,152,889	-		MIT1002_01939	0.57	+0.5
2,152,913	-		MIT1002_01939	0.62	-0.2
2,152,937	+		MIT1002_01939	0.66	+0.9
2,152,959	-		MIT1002_01939	0.71	+1.1
2,152,966	+		MIT1002_01939	0.72	-0.2
2,152,966	+		MIT1002_01939	0.72	-0.7
2,152,966	+		MIT1002_01939	0.72	-2.1
2,152,966	+		MIT1002_01939	0.72	+0.4
2,152,974	-		MIT1002_01939	0.74	+0.2
2,153,026	+		MIT1002_01939	0.84	-0.7
2,153,031	+		MIT1002_01939	0.85	-0.0
2,153,034	-		MIT1002_01939	0.86	+2.1
2,153,114	+				+0.3
2,153,122	-				+0.6
2,153,135	+				-1.3
2,153,135	+				+0.6
2,153,143	-				-1.5
2,153,145	+				-1.3
2,153,153	-				+0.5
2,153,202	-				+0.9
2,153,234	+				-1.4
2,153,367	+				+1.1
2,153,483	+		MIT1002_01940	0.13	+1.2
2,153,488	+		MIT1002_01940	0.13	+1.3
2,153,488	+		MIT1002_01940	0.13	+1.4
2,153,491	-		MIT1002_01940	0.13	+2.3
2,153,491	-		MIT1002_01940	0.13	+2.2
2,153,491	-		MIT1002_01940	0.13	+0.2
2,153,507	-		MIT1002_01940	0.14	-0.3
2,153,627	+		MIT1002_01940	0.22	+1.1
2,153,629	+		MIT1002_01940	0.23	+0.4
2,153,645	+		MIT1002_01940	0.24	-0.7
2,153,661	+		MIT1002_01940	0.25	+1.7
2,153,666	+		MIT1002_01940	0.25	+1.2
2,153,666	+		MIT1002_01940	0.25	+2.5
2,153,674	-		MIT1002_01940	0.26	-0.3
2,153,674	-		MIT1002_01940	0.26	+1.6
2,153,707	-		MIT1002_01940	0.28	+1.6
2,153,718	-		MIT1002_01940	0.29	+2.0
2,153,732	-		MIT1002_01940	0.30	-0.5
2,153,778	+		MIT1002_01940	0.33	+0.3
2,153,836	-		MIT1002_01940	0.37	+1.1