Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01916

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
2,123,391	+		MIT1002_01914	0.43	-0.4
2,123,391	+		MIT1002_01914	0.43	+2.8
2,123,399	-		MIT1002_01914	0.47	-0.4
2,123,399	-		MIT1002_01914	0.47	+0.1
2,123,399	-		MIT1002_01914	0.47	-0.4
2,123,399	-		MIT1002_01914	0.47	+0.1
2,123,399	-		MIT1002_01914	0.47	-0.4
2,123,399	-		MIT1002_01914	0.47	-2.8
2,123,399	-		MIT1002_01914	0.47	+0.7
2,123,401	+		MIT1002_01914	0.49	-0.1
2,123,414	+		MIT1002_01914	0.56	-1.6
2,123,414	+		MIT1002_01914	0.56	+0.4
2,123,422	-		MIT1002_01914	0.60	+0.9
2,123,437	-		MIT1002_01914	0.69	-0.3
2,123,437	-		MIT1002_01914	0.69	-2.7
2,123,437	-		MIT1002_01914	0.69	+0.7
2,123,454	-		MIT1002_01914	0.79	+1.7
2,123,549	+				-1.5
2,123,623	-				+1.3
2,123,623	-				-4.2
2,123,627	+				-0.1
2,123,635	-				-1.2
2,123,640	-				-0.6
2,123,644	+				+0.4
2,123,652	-				-0.5
2,123,652	-				+0.5
2,123,652	-				+0.3
2,123,654	-				+0.6
2,123,654	-				-0.1
2,123,680	-		MIT1002_01915	0.13	-2.2
2,123,751	-		MIT1002_01915	0.23	+0.3
2,123,800	+		MIT1002_01915	0.30	+0.9
2,123,960	+		MIT1002_01915	0.53	-1.8
2,123,960	+		MIT1002_01915	0.53	+2.1
2,123,960	+		MIT1002_01915	0.53	+0.0
2,123,960	+		MIT1002_01915	0.53	-1.6
2,123,960	+		MIT1002_01915	0.53	+1.6
2,123,960	+		MIT1002_01915	0.53	+0.9
2,123,960	+		MIT1002_01915	0.53	-1.3
2,123,968	-		MIT1002_01915	0.54	+0.5
2,123,988	+		MIT1002_01915	0.57	-2.1
2,123,988	+		MIT1002_01915	0.57	-1.1
2,124,017	+		MIT1002_01915	0.61	+1.9
2,124,042	-		MIT1002_01915	0.65	-1.1
2,124,054	+		MIT1002_01915	0.67	+1.5
2,124,062	-		MIT1002_01915	0.68	-0.5
2,124,073	+		MIT1002_01915	0.69	-0.2
2,124,145	+		MIT1002_01915	0.80	+1.2
2,124,146	-		MIT1002_01915	0.80	+1.3
2,124,167	+		MIT1002_01915	0.83	-1.7
2,124,232	+				-1.3
2,124,290	+				-0.6
2,124,298	-				-2.1
2,124,323	+				-2.1
2,124,323	+				-0.3
2,124,364	+		MIT1002_01916	0.12	-1.9
2,124,464	-		MIT1002_01916	0.28	+0.5
2,124,510	-		MIT1002_01916	0.36	+0.6
2,124,511	-		MIT1002_01916	0.36	+1.0
2,124,511	-		MIT1002_01916	0.36	+0.5
2,124,556	-		MIT1002_01916	0.43	-3.0
2,124,570	+		MIT1002_01916	0.46	+1.1
2,124,677	+		MIT1002_01916	0.64	+0.4
2,124,677	+		MIT1002_01916	0.64	+0.5
2,124,685	-		MIT1002_01916	0.65	+0.4
2,124,685	-		MIT1002_01916	0.65	+1.9
2,124,685	-		MIT1002_01916	0.65	+0.9
2,124,733	+		MIT1002_01916	0.73	+0.5
2,124,740	+		MIT1002_01916	0.74	+0.2
2,124,741	-		MIT1002_01916	0.74	-0.3
2,124,749	-		MIT1002_01916	0.75	-0.0
2,124,779	+		MIT1002_01916	0.80	-0.2
2,124,787	-		MIT1002_01916	0.82	+0.4
2,124,919	+				-0.4
2,125,174	+		MIT1002_01917	0.41	+0.8
2,125,200	+		MIT1002_01917	0.45	-1.8
2,125,273	-		MIT1002_01917	0.56	+0.5
2,125,350	+		MIT1002_01917	0.67	-1.7
2,125,350	+		MIT1002_01917	0.67	+0.8
2,125,358	-		MIT1002_01917	0.69	-0.2
2,125,519	+				-1.4
2,125,521	+				-1.0
2,125,681	+				+0.1
2,125,759	-		MIT1002_01918	0.24	-0.3
2,125,823	+		MIT1002_01918	0.40	-0.1
2,125,842	-		MIT1002_01918	0.44	-0.4
2,125,880	+		MIT1002_01918	0.54	+0.2