Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01860

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
2,071,576	+		MIT1002_01859	0.66	+1.4
2,071,584	-		MIT1002_01859	0.66	-0.7
2,071,602	+		MIT1002_01859	0.67	+0.5
2,071,610	-		MIT1002_01859	0.67	-0.2
2,071,639	+		MIT1002_01859	0.69	-0.5
2,071,675	+		MIT1002_01859	0.70	-0.7
2,071,717	+		MIT1002_01859	0.72	+0.5
2,071,725	+		MIT1002_01859	0.72	-0.1
2,071,725	-		MIT1002_01859	0.72	-0.4
2,071,733	-		MIT1002_01859	0.72	-0.7
2,071,744	-		MIT1002_01859	0.73	-1.3
2,071,750	-		MIT1002_01859	0.73	+1.3
2,071,758	+		MIT1002_01859	0.73	-0.3
2,071,759	-		MIT1002_01859	0.74	-0.3
2,071,796	-		MIT1002_01859	0.75	+0.5
2,071,808	-		MIT1002_01859	0.76	+0.7
2,071,816	+		MIT1002_01859	0.76	-1.0
2,071,825	+		MIT1002_01859	0.76	-0.4
2,071,825	+		MIT1002_01859	0.76	-0.1
2,071,833	-		MIT1002_01859	0.77	-0.4
2,071,833	-		MIT1002_01859	0.77	+0.3
2,071,833	-		MIT1002_01859	0.77	+0.0
2,071,886	-		MIT1002_01859	0.79	-1.0
2,071,937	+		MIT1002_01859	0.81	-0.5
2,071,949	+		MIT1002_01859	0.81	-0.7
2,071,957	-		MIT1002_01859	0.82	-2.9
2,071,957	-		MIT1002_01859	0.82	-0.8
2,071,971	-		MIT1002_01859	0.82	+1.9
2,072,019	+		MIT1002_01859	0.84	+0.4
2,072,042	-		MIT1002_01859	0.85	-1.7
2,072,196	-				+0.1
2,072,216	-				-1.0
2,072,238	+				-0.4
2,072,359	-				-1.9
2,072,410	+				-0.2
2,072,420	+				-0.5
2,072,426	-				-2.0
2,072,532	-				+0.3
2,072,542	+				-0.5
2,072,649	+		MIT1002_01860	0.12	-0.7
2,072,689	+		MIT1002_01860	0.17	-1.5
2,072,689	+		MIT1002_01860	0.17	+0.6
2,072,689	+		MIT1002_01860	0.17	-1.5
2,072,697	-		MIT1002_01860	0.18	-0.9
2,072,697	-		MIT1002_01860	0.18	-0.7
2,072,697	-		MIT1002_01860	0.18	-1.3
2,072,812	-		MIT1002_01860	0.30	+0.3
2,072,851	-		MIT1002_01860	0.35	+0.6
2,072,898	+		MIT1002_01860	0.40	-0.1
2,072,906	+		MIT1002_01860	0.41	-2.4
2,072,940	+		MIT1002_01860	0.45	-1.7
2,072,948	-		MIT1002_01860	0.46	+0.7
2,073,055	-		MIT1002_01860	0.57	-2.0
2,073,061	+		MIT1002_01860	0.58	+0.7
2,073,070	+		MIT1002_01860	0.59	+0.3
2,073,080	+		MIT1002_01860	0.60	-1.3
2,073,088	-		MIT1002_01860	0.61	-0.5
2,073,088	-		MIT1002_01860	0.61	+0.4
2,073,090	+		MIT1002_01860	0.61	+0.7
2,073,090	+		MIT1002_01860	0.61	-1.1
2,073,204	+		MIT1002_01860	0.74	-0.1
2,073,235	-		MIT1002_01860	0.77	-0.5
2,073,235	-		MIT1002_01860	0.77	-0.5
2,073,235	-		MIT1002_01860	0.77	+0.4
2,073,235	-		MIT1002_01860	0.77	-0.3
2,073,260	-		MIT1002_01860	0.80	-0.5
2,073,266	-		MIT1002_01860	0.81	-0.5
2,073,270	-		MIT1002_01860	0.81	+0.3
2,073,270	-		MIT1002_01860	0.81	-0.7
2,073,270	-		MIT1002_01860	0.81	+0.1
2,073,270	-		MIT1002_01860	0.81	+0.1
2,073,290	-		MIT1002_01860	0.83	-0.1
2,073,290	-		MIT1002_01860	0.83	+0.3
2,073,429	+				+1.2
2,073,437	-				-2.1
2,073,447	+				-1.6
2,073,455	-				+1.9
2,073,460	-				+0.7
2,073,467	-				+0.4
2,073,477	+				+0.1
2,073,477	+				+0.7
2,073,477	+				+0.1
2,073,483	-				-0.8
2,073,529	-				-0.2
2,073,529	-				+1.8
2,073,540	-				+0.1
2,073,548	+				-0.1
2,073,562	-				-2.1
2,073,562	-				+7.0
2,073,570	-				+0.1
2,073,572	-				+0.9
2,073,675	+				-0.9
2,073,697	-				-1.3
2,073,708	+				-0.4
2,073,780	+		MIT1002_01861	0.10	-2.2
2,073,795	+		MIT1002_01861	0.13	+0.8
2,073,803	-		MIT1002_01861	0.14	+0.2
2,073,826	+		MIT1002_01861	0.17	-0.9
2,073,828	-		MIT1002_01861	0.17	+0.7
2,073,872	+		MIT1002_01861	0.24	+0.3
2,073,877	+		MIT1002_01861	0.24	-1.2
2,073,884	+		MIT1002_01861	0.25	-1.5
2,073,894	-		MIT1002_01861	0.27	+0.6
2,073,953	+		MIT1002_01861	0.35	-3.8
2,073,962	+		MIT1002_01861	0.36	-0.8
2,073,975	-		MIT1002_01861	0.38	+0.7
2,074,158	+		MIT1002_01861	0.64	-2.3
2,074,177	+		MIT1002_01861	0.67	-0.3
2,074,259	+		MIT1002_01861	0.78	-1.5
2,074,261	-		MIT1002_01861	0.79	+1.3
2,074,267	-		MIT1002_01861	0.80	+1.3
2,074,267	-		MIT1002_01861	0.80	+1.5
2,074,311	+		MIT1002_01861	0.86	-2.8