Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01561

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
1,714,925	-		MIT1002_01560	0.40	+0.1
1,714,955	-		MIT1002_01560	0.43	-0.5
1,714,982	-		MIT1002_01560	0.45	-0.6
1,714,990	+		MIT1002_01560	0.46	+0.1
1,714,990	+		MIT1002_01560	0.46	-0.1
1,714,990	+		MIT1002_01560	0.46	-0.8
1,714,990	+		MIT1002_01560	0.46	+2.0
1,714,990	+		MIT1002_01560	0.46	-0.3
1,714,998	-		MIT1002_01560	0.47	-0.2
1,715,038	+		MIT1002_01560	0.51	-0.4
1,715,040	+		MIT1002_01560	0.51	+0.1
1,715,076	+		MIT1002_01560	0.55	-1.5
1,715,208	+		MIT1002_01560	0.68	-0.4
1,715,230	-		MIT1002_01560	0.70	+1.1
1,715,237	+		MIT1002_01560	0.70	+0.8
1,715,240	-		MIT1002_01560	0.71	-0.1
1,715,242	+		MIT1002_01560	0.71	+0.9
1,715,293	+		MIT1002_01560	0.76	-2.4
1,715,293	+		MIT1002_01560	0.76	+0.4
1,715,293	+		MIT1002_01560	0.76	-1.3
1,715,301	-		MIT1002_01560	0.77	+1.5
1,715,332	-		MIT1002_01560	0.80	-0.4
1,715,353	-		MIT1002_01560	0.82	-0.6
1,715,451	+				+0.1
1,715,503	+				-0.8
1,715,503	+				+2.1
1,715,505	+				-0.3
1,715,511	-				+1.5
1,715,511	-				+0.3
1,715,588	-				-0.2
1,715,593	-				-1.6
1,715,714	+				+1.1
1,715,729	-				-1.2
1,715,784	+				+0.1
1,715,788	-				-2.0
1,715,791	+				-1.6
1,715,792	-				-0.2
1,715,794	+				-0.5
1,715,853	+				-1.6
1,715,853	+				-0.8
1,715,858	+				+0.2
1,715,858	+				+2.4
1,715,858	+				-1.5
1,715,858	+				+0.8
1,715,861	-				+0.5
1,715,866	-				-0.1
1,715,866	-				-1.1
1,715,866	-				+1.2
1,715,889	-				-0.3
1,715,889	-				+0.6
1,715,889	-				-0.8
1,715,979	-				-0.7
1,715,979	-				+0.5
1,716,021	-				+1.1
1,716,054	+				+2.3
1,716,056	-				-0.4
1,716,056	-				-1.3
1,716,062	-				+0.0
1,716,118	+				-0.4
1,716,118	+				-1.1
1,716,118	+				+0.4
1,716,118	+				+1.9
1,716,118	+				+0.3
1,716,126	-				+0.0
1,716,126	-				+0.5
1,716,126	-				-0.1
1,716,126	-				-1.1
1,716,126	-				-0.3
1,716,169	-		MIT1002_01561	0.11	-0.3
1,716,194	+		MIT1002_01561	0.12	-1.2
1,716,324	-		MIT1002_01561	0.16	-1.3
1,716,324	-		MIT1002_01561	0.16	-0.3
1,716,393	+		MIT1002_01561	0.19	-0.6
1,716,440	-		MIT1002_01561	0.20	-0.3
1,716,440	-		MIT1002_01561	0.20	-0.2
1,716,491	-		MIT1002_01561	0.22	-2.5
1,716,513	-		MIT1002_01561	0.22	-0.8
1,716,609	-		MIT1002_01561	0.26	-1.7
1,716,609	-		MIT1002_01561	0.26	-0.2
1,716,614	-		MIT1002_01561	0.26	-0.4
1,716,695	+		MIT1002_01561	0.28	+0.8
1,716,773	+		MIT1002_01561	0.31	-3.1
1,716,774	+		MIT1002_01561	0.31	+1.3
1,716,792	-		MIT1002_01561	0.32	+0.4
1,716,794	+		MIT1002_01561	0.32	-0.8
1,716,912	-		MIT1002_01561	0.36	+1.6
1,716,918	+		MIT1002_01561	0.36	+0.4
1,716,926	-		MIT1002_01561	0.36	+0.4
1,716,937	-		MIT1002_01561	0.36	+1.1
1,716,987	+		MIT1002_01561	0.38	-1.3
1,717,032	-		MIT1002_01561	0.40	+0.8
1,717,051	+		MIT1002_01561	0.40	+1.9
1,717,058	+		MIT1002_01561	0.40	+0.9
1,717,061	-		MIT1002_01561	0.40	+1.1
1,717,063	+		MIT1002_01561	0.41	-1.1
1,717,066	-		MIT1002_01561	0.41	-2.6
1,717,066	-		MIT1002_01561	0.41	-1.6
1,717,071	-		MIT1002_01561	0.41	-2.1
1,717,071	-		MIT1002_01561	0.41	+0.8
1,717,071	-		MIT1002_01561	0.41	+1.4
1,717,071	-		MIT1002_01561	0.41	+0.7
1,717,071	-		MIT1002_01561	0.41	-0.7
1,717,071	-		MIT1002_01561	0.41	-1.3
1,717,090	-		MIT1002_01561	0.41	+0.1
1,717,156	+		MIT1002_01561	0.44	+0.1
1,717,178	+		MIT1002_01561	0.44	+0.6
1,717,178	+		MIT1002_01561	0.44	+1.9
1,717,178	+		MIT1002_01561	0.44	-1.0
1,717,197	-		MIT1002_01561	0.45	-0.2
1,717,205	+		MIT1002_01561	0.45	+0.0
1,717,221	-		MIT1002_01561	0.46	+0.1
1,717,266	-		MIT1002_01561	0.47	-0.1
1,717,291	+		MIT1002_01561	0.48	-1.2
1,717,335	+		MIT1002_01561	0.49	+0.9
1,717,335	+		MIT1002_01561	0.49	-0.9
1,717,335	+		MIT1002_01561	0.49	-0.5
1,717,337	+		MIT1002_01561	0.50	-0.1
1,717,343	-		MIT1002_01561	0.50	-0.6
1,717,343	-		MIT1002_01561	0.50	+0.8
1,717,343	-		MIT1002_01561	0.50	+6.8
1,717,343	-		MIT1002_01561	0.50	-0.3
1,717,345	-		MIT1002_01561	0.50	-0.8
1,717,345	-		MIT1002_01561	0.50	-1.9
1,717,345	-		MIT1002_01561	0.50	-0.9
1,717,345	-		MIT1002_01561	0.50	-3.0
1,717,345	-		MIT1002_01561	0.50	-1.4
1,717,345	-		MIT1002_01561	0.50	+2.4
1,717,345	-		MIT1002_01561	0.50	+1.6
1,717,367	-		MIT1002_01561	0.50	-0.5
1,717,435	+		MIT1002_01561	0.53	+0.9
1,717,478	+		MIT1002_01561	0.54	+0.2
1,717,485	+		MIT1002_01561	0.54	-1.3
1,717,488	-		MIT1002_01561	0.54	+1.8
1,717,493	-		MIT1002_01561	0.55	-0.0
1,717,556	-		MIT1002_01561	0.57	+1.8
1,717,649	+		MIT1002_01561	0.60	+0.7
1,717,652	-		MIT1002_01561	0.60	-0.1
1,717,775	+		MIT1002_01561	0.64	+1.0
1,717,910	-		MIT1002_01561	0.68	+0.2
1,717,945	+		MIT1002_01561	0.69	+0.7
1,717,954	+		MIT1002_01561	0.70	+0.2
1,717,954	+		MIT1002_01561	0.70	+2.4
1,717,962	-		MIT1002_01561	0.70	+0.6
1,717,962	-		MIT1002_01561	0.70	-0.1
1,717,962	-		MIT1002_01561	0.70	-0.4
1,718,041	-		MIT1002_01561	0.73	-0.4
1,718,073	-		MIT1002_01561	0.74	-0.6
1,718,095	+		MIT1002_01561	0.74	+0.5
1,718,157	-		MIT1002_01561	0.76	+2.4
1,718,172	-		MIT1002_01561	0.77	-0.6
1,718,189	+		MIT1002_01561	0.77	+1.0
1,718,211	+		MIT1002_01561	0.78	-0.3
1,718,218	-		MIT1002_01561	0.78	-1.2
1,718,256	+		MIT1002_01561	0.80	-1.6
1,718,264	-		MIT1002_01561	0.80	-0.6
1,718,295	-		MIT1002_01561	0.81	-0.2
1,718,295	-		MIT1002_01561	0.81	-1.5
1,718,370	-		MIT1002_01561	0.83	-1.3
1,718,430	-		MIT1002_01561	0.85	+0.1
1,718,554	-		MIT1002_01561	0.89	+1.8
1,718,569	-		MIT1002_01561	0.90	-1.5
1,718,587	-				-0.9
1,718,659	+				-1.9
1,718,666	-				-0.5
1,718,729	+				+0.7
1,718,736	+				-1.8
1,718,825	-				-0.8
1,718,825	-				+1.1
1,718,884	-				-0.2
1,718,903	+				+1.1
1,718,903	+				+0.1
1,718,911	-				-0.1
1,718,911	-				-2.2
1,719,019	+		MIT1002_01562	0.12	+0.8
1,719,079	-		MIT1002_01562	0.18	-0.5
1,719,126	-		MIT1002_01562	0.22	+1.0
1,719,132	+		MIT1002_01562	0.22	+0.4
1,719,135	-		MIT1002_01562	0.23	-0.5
1,719,219	+		MIT1002_01562	0.30	-0.1
1,719,229	+		MIT1002_01562	0.31	-0.0
1,719,229	+		MIT1002_01562	0.31	+0.6
1,719,290	-		MIT1002_01562	0.36	+1.7
1,719,305	-		MIT1002_01562	0.38	+0.3
1,719,432	+		MIT1002_01562	0.49	-1.0
1,719,450	-		MIT1002_01562	0.50	+0.4
1,719,457	-		MIT1002_01562	0.51	+0.1
1,719,468	-		MIT1002_01562	0.52	-0.5
1,719,469	-		MIT1002_01562	0.52	-0.2
1,719,528	+		MIT1002_01562	0.57	+0.4
1,719,531	-		MIT1002_01562	0.57	-0.8
1,719,531	-		MIT1002_01562	0.57	+1.6
1,719,534	-		MIT1002_01562	0.58	+1.8
1,719,545	-		MIT1002_01562	0.59	-1.5
1,719,545	-		MIT1002_01562	0.59	-1.0
1,719,552	-		MIT1002_01562	0.59	+0.1
1,719,571	-		MIT1002_01562	0.61	-0.2
1,719,604	-		MIT1002_01562	0.64	-0.7
1,719,689	+		MIT1002_01562	0.71	-1.5
1,719,695	-		MIT1002_01562	0.72	-0.5
1,719,697	-		MIT1002_01562	0.72	+0.1
1,719,697	-		MIT1002_01562	0.72	-2.6
1,719,697	-		MIT1002_01562	0.72	-0.7
1,719,813	-		MIT1002_01562	0.82	-1.8
1,719,827	+		MIT1002_01562	0.84	+3.2
1,719,851	+		MIT1002_01562	0.86	+0.9
1,719,863	+		MIT1002_01562	0.87	-1.5
1,719,873	-		MIT1002_01562	0.88	-0.3