Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01417

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
1,561,138	+		MIT1002_01416	0.74	+1.0
1,561,146	-		MIT1002_01416	0.75	-0.3
1,561,146	-		MIT1002_01416	0.75	-0.1
1,561,148	+		MIT1002_01416	0.75	+0.6
1,561,189	+		MIT1002_01416	0.76	-0.6
1,561,243	-		MIT1002_01416	0.79	+1.3
1,561,243	-		MIT1002_01416	0.79	-0.4
1,561,275	+		MIT1002_01416	0.80	-0.8
1,561,452	-		MIT1002_01416	0.87	+0.1
1,561,467	-		MIT1002_01416	0.87	+1.5
1,561,472	-		MIT1002_01416	0.88	-1.9
1,561,477	-		MIT1002_01416	0.88	-0.8
1,561,584	+				-0.4
1,561,626	+				+0.5
1,561,626	+				-1.7
1,561,633	-				+0.1
1,561,671	-				-0.7
1,561,767	-				-0.4
1,561,819	-				+0.1
1,561,826	+				+2.3
1,561,838	+				-1.0
1,561,860	-				+0.2
1,561,887	-				-1.3
1,561,898	-				+1.2
1,562,023	+				+0.9
1,562,031	-				+0.5
1,562,088	-				+2.2
1,562,117	+				-0.8
1,562,177	+				-0.4
1,562,177	+				-1.6
1,562,257	+		MIT1002_01417	0.16	+0.6
1,562,264	+		MIT1002_01417	0.17	-0.2
1,562,265	-		MIT1002_01417	0.17	-0.5
1,562,274	+		MIT1002_01417	0.18	-1.3
1,562,303	+		MIT1002_01417	0.21	+0.3
1,562,322	-		MIT1002_01417	0.23	-0.9
1,562,371	+		MIT1002_01417	0.29	-1.9
1,562,398	+		MIT1002_01417	0.32	+0.0
1,562,398	+		MIT1002_01417	0.32	-0.5
1,562,448	+		MIT1002_01417	0.37	+0.0
1,562,448	+		MIT1002_01417	0.37	+1.4
1,562,448	+		MIT1002_01417	0.37	+1.3
1,562,448	+		MIT1002_01417	0.37	+0.1
1,562,453	-		MIT1002_01417	0.38	+0.6
1,562,456	-		MIT1002_01417	0.38	+2.9
1,562,456	-		MIT1002_01417	0.38	-1.7
1,562,478	+		MIT1002_01417	0.41	-0.4
1,562,494	+		MIT1002_01417	0.42	-0.6
1,562,523	-		MIT1002_01417	0.46	-0.3
1,562,523	-		MIT1002_01417	0.46	-1.3
1,562,556	+		MIT1002_01417	0.49	+0.5
1,562,556	+		MIT1002_01417	0.49	+0.5
1,562,564	-		MIT1002_01417	0.50	-1.1
1,562,568	+		MIT1002_01417	0.51	-0.3
1,562,576	-		MIT1002_01417	0.52	+0.5
1,562,595	+		MIT1002_01417	0.54	+2.7
1,562,595	+		MIT1002_01417	0.54	+2.2
1,562,595	+		MIT1002_01417	0.54	+0.1
1,562,595	+		MIT1002_01417	0.54	-1.0
1,562,595	+		MIT1002_01417	0.54	+1.3
1,562,595	+		MIT1002_01417	0.54	+2.2
1,562,603	-		MIT1002_01417	0.55	+1.0
1,562,603	-		MIT1002_01417	0.55	-0.4
1,562,633	+		MIT1002_01417	0.58	+0.0
1,562,633	+		MIT1002_01417	0.58	+0.0
1,562,639	+		MIT1002_01417	0.59	-0.8
1,562,707	-		MIT1002_01417	0.66	-0.2
1,562,738	-		MIT1002_01417	0.70	-0.0
1,562,816	+		MIT1002_01417	0.78	+1.0
1,562,980	-				+1.2
1,562,990	-				+1.4
1,563,123	-		MIT1002_01418	0.24	-0.5
1,563,239	+		MIT1002_01418	0.56	-2.0
1,563,289	+		MIT1002_01418	0.69	-1.2
1,563,397	-				+0.2
1,563,614	+		MIT1002_01419	0.13	-0.8
1,563,648	+		MIT1002_01419	0.17	-1.4
1,563,652	+		MIT1002_01419	0.17	-1.9
1,563,699	-		MIT1002_01419	0.22	+1.3
1,563,721	+		MIT1002_01419	0.24	+0.7
1,563,726	+		MIT1002_01419	0.24	-3.1
1,563,726	+		MIT1002_01419	0.24	-1.0
1,563,726	+		MIT1002_01419	0.24	-0.5
1,563,726	+		MIT1002_01419	0.24	+0.6
1,563,734	-		MIT1002_01419	0.25	-1.0
1,563,825	+		MIT1002_01419	0.34	+1.4
1,563,860	-		MIT1002_01419	0.37	+0.7
1,563,868	+		MIT1002_01419	0.38	-1.1
1,563,989	+		MIT1002_01419	0.49	+2.6