Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01330

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01329 and MIT1002_01330 are separated by 3 nucleotidesMIT1002_01330 and MIT1002_01331 overlap by 1 nucleotidesMIT1002_01331 and MIT1002_01332 are separated by 36 nucleotides MIT1002_01329: MIT1002_01329 - Aspartate--tRNA ligase, at 1,475,726 to 1,477,486 _01329 MIT1002_01330: MIT1002_01330 - Dihydroneopterin triphosphate pyrophosphatase, at 1,477,490 to 1,477,930 _01330 MIT1002_01331: MIT1002_01331 - Crossover junction endodeoxyribonuclease RuvC, at 1,477,930 to 1,478,448 _01331 MIT1002_01332: MIT1002_01332 - Holliday junction ATP-dependent DNA helicase RuvA, at 1,478,485 to 1,479,105 _01332 Position (kb) 1477 1478Strain fitness (log2 ratio) -1 0 1at 1477.547 kb on + strand, within MIT1002_01330at 1477.683 kb on + strand, within MIT1002_01330at 1477.947 kb on + strandat 1478.443 kb on + strandat 1478.451 kb on - strandat 1478.453 kb on + strandat 1478.609 kb on + strand, within MIT1002_01332at 1478.822 kb on - strand, within MIT1002_01332at 1478.909 kb on - strand, within MIT1002_01332

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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1,477,547 + MIT1002_01330 0.13 -0.9
1,477,683 + MIT1002_01330 0.44 -0.3
1,477,947 + +0.9
1,478,443 + -0.2
1,478,451 - +1.2
1,478,453 + -0.8
1,478,609 + MIT1002_01332 0.20 +0.9
1,478,822 - MIT1002_01332 0.54 +0.6
1,478,909 - MIT1002_01332 0.68 +0.6

Or see this region's nucleotide sequence