Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01098

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
1,204,371	+		MIT1002_01096	0.35	-3.3
1,204,371	+		MIT1002_01096	0.35	+1.6
1,204,379	-		MIT1002_01096	0.38	-1.2
1,204,493	+		MIT1002_01096	0.80	-1.9
1,204,549	+				-0.4
1,204,549	+				+0.5
1,204,678	+		MIT1002_01097	0.15	-2.3
1,204,678	+		MIT1002_01097	0.15	+0.7
1,204,703	-		MIT1002_01097	0.18	+0.6
1,204,728	-		MIT1002_01097	0.22	-0.7
1,204,732	+		MIT1002_01097	0.22	-0.0
1,204,800	+		MIT1002_01097	0.31	-0.2
1,204,861	-		MIT1002_01097	0.39	-3.7
1,204,866	-		MIT1002_01097	0.39	+1.1
1,204,877	+		MIT1002_01097	0.41	-2.1
1,204,877	+		MIT1002_01097	0.41	-0.6
1,204,885	-		MIT1002_01097	0.42	-0.9
1,204,885	-		MIT1002_01097	0.42	-2.6
1,204,885	-		MIT1002_01097	0.42	+1.0
1,204,914	+		MIT1002_01097	0.46	-0.5
1,204,914	+		MIT1002_01097	0.46	-1.7
1,204,914	+		MIT1002_01097	0.46	-2.7
1,204,914	+		MIT1002_01097	0.46	-0.7
1,204,922	-		MIT1002_01097	0.47	-0.5
1,204,922	-		MIT1002_01097	0.47	-1.0
1,204,922	-		MIT1002_01097	0.47	-1.2
1,204,922	-		MIT1002_01097	0.47	-2.5
1,205,017	-		MIT1002_01097	0.59	-0.3
1,205,024	-		MIT1002_01097	0.60	-2.1
1,205,042	+		MIT1002_01097	0.62	-0.9
1,205,050	-		MIT1002_01097	0.63	+1.6
1,205,052	+		MIT1002_01097	0.63	-1.6
1,205,063	-		MIT1002_01097	0.65	-2.5
1,205,078	-		MIT1002_01097	0.67	-1.2
1,205,082	+		MIT1002_01097	0.67	-2.0
1,205,113	+		MIT1002_01097	0.71	-1.0
1,205,113	-		MIT1002_01097	0.71	-0.8
1,205,144	+		MIT1002_01097	0.75	-0.9
1,205,159	-		MIT1002_01097	0.77	-1.6
1,205,178	-		MIT1002_01097	0.79	-2.6
1,205,178	-		MIT1002_01097	0.79	-2.7
1,205,178	-		MIT1002_01097	0.79	-2.1
1,205,224	+		MIT1002_01097	0.85	-2.5
1,205,283	-				-0.1
1,205,298	-				-1.2
1,205,305	+				-0.9
1,205,313	-				+1.2
1,205,435	-				-1.7
1,205,445	+				-0.7
1,205,445	+				+0.3
1,205,445	+				-1.8
1,205,453	-				-0.6
1,205,453	-				+0.5
1,205,453	-				+0.4
1,205,615	-		MIT1002_01098	0.24	-0.8
1,205,620	+		MIT1002_01098	0.24	-0.6
1,205,625	+		MIT1002_01098	0.25	-0.7
1,205,628	-		MIT1002_01098	0.25	-2.5
1,205,628	-		MIT1002_01098	0.25	-0.5
1,205,676	+		MIT1002_01098	0.29	-1.0
1,205,704	+		MIT1002_01098	0.32	-2.0
1,205,704	+		MIT1002_01098	0.32	-0.6
1,205,705	-		MIT1002_01098	0.32	+0.5
1,205,729	+		MIT1002_01098	0.34	+0.6
1,205,729	+		MIT1002_01098	0.34	-1.8
1,205,781	+		MIT1002_01098	0.39	+0.3
1,205,833	-		MIT1002_01098	0.43	+0.7
1,205,897	+		MIT1002_01098	0.49	-1.1
1,205,905	-		MIT1002_01098	0.50	+0.3
1,205,913	-		MIT1002_01098	0.50	-1.0
1,206,016	+		MIT1002_01098	0.60	-0.2
1,206,090	-		MIT1002_01098	0.66	+0.5
1,206,137	-		MIT1002_01098	0.70	-1.0
1,206,171	+		MIT1002_01098	0.73	+1.0
1,206,320	-		MIT1002_01098	0.87	-1.5
1,206,407	-				-2.2
1,206,411	-				+1.4
1,206,463	+				-1.6
1,206,468	+				+0.6
1,206,563	-		MIT1002_01099	0.64	-1.5
1,206,618	-		MIT1002_01099	0.84	+1.0
1,206,691	-				-0.1
1,206,697	-				+0.6
1,206,717	-				+1.8
1,206,727	-				+1.0
1,206,727	-				+1.3
1,206,757	+				+2.3
1,206,766	+				+2.9
1,206,897	-				-1.5
1,206,909	-				-2.1
1,206,909	-				-0.0
1,206,976	+				-1.0
1,206,994	+				-0.6
1,207,070	-				-1.7
1,207,072	+				-0.4
1,207,177	-		MIT1002_01100	0.13	-4.0
1,207,189	+		MIT1002_01100	0.14	-0.5
1,207,363	+		MIT1002_01100	0.22	-2.1
1,207,425	+		MIT1002_01100	0.25	-1.0
1,207,455	-		MIT1002_01100	0.26	+0.1
1,207,464	+		MIT1002_01100	0.27	+0.2