Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00877 and MIT1002_00878 are separated by 340 nucleotides MIT1002_00878 and MIT1002_00879 are separated by 96 nucleotides
MIT1002_00877: MIT1002_00877 - Repressor protein PhoU, at 969,696 to 970,412
_00877
MIT1002_00878: MIT1002_00878 - Sulfate permease CysP, at 970,753 to 972,024
_00878
MIT1002_00879: MIT1002_00879 - Universal stress protein E, at 972,121 to 973,098
_00879
Position (kb) 970
971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 969.776 kb on - strand, within MIT1002_00877 at 969.866 kb on - strand, within MIT1002_00877 at 969.961 kb on - strand, within MIT1002_00877 at 970.014 kb on - strand, within MIT1002_00877 at 970.112 kb on - strand, within MIT1002_00877 at 970.150 kb on - strand, within MIT1002_00877 at 970.150 kb on - strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.271 kb on + strand, within MIT1002_00877 at 970.288 kb on + strand, within MIT1002_00877 at 970.351 kb on + strand at 970.359 kb on - strand at 970.363 kb on + strand at 970.371 kb on - strand at 972.019 kb on + strand at 972.019 kb on + strand at 972.029 kb on - strand at 972.050 kb on - strand at 972.140 kb on - strand at 972.154 kb on + strand at 972.164 kb on - strand at 972.176 kb on + strand at 972.184 kb on - strand at 972.208 kb on + strand at 972.212 kb on + strand at 972.217 kb on + strand at 972.231 kb on + strand, within MIT1002_00879 at 972.231 kb on + strand, within MIT1002_00879 at 972.232 kb on + strand, within MIT1002_00879 at 972.248 kb on + strand, within MIT1002_00879 at 972.346 kb on + strand, within MIT1002_00879 at 972.354 kb on - strand, within MIT1002_00879 at 972.456 kb on - strand, within MIT1002_00879 at 972.470 kb on - strand, within MIT1002_00879 at 972.515 kb on + strand, within MIT1002_00879 at 972.515 kb on + strand, within MIT1002_00879 at 972.517 kb on + strand, within MIT1002_00879 at 972.523 kb on - strand, within MIT1002_00879 at 972.523 kb on - strand, within MIT1002_00879 at 972.530 kb on - strand, within MIT1002_00879 at 972.597 kb on - strand, within MIT1002_00879 at 972.627 kb on - strand, within MIT1002_00879 at 972.664 kb on - strand, within MIT1002_00879 at 972.722 kb on - strand, within MIT1002_00879 at 972.722 kb on - strand, within MIT1002_00879 at 972.745 kb on + strand, within MIT1002_00879 at 972.745 kb on + strand, within MIT1002_00879 at 972.750 kb on + strand, within MIT1002_00879 at 972.819 kb on + strand, within MIT1002_00879 at 972.840 kb on + strand, within MIT1002_00879 at 972.848 kb on - strand, within MIT1002_00879 at 972.894 kb on - strand, within MIT1002_00879 at 972.894 kb on - strand, within MIT1002_00879 at 973.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 969,776 - MIT1002_00877 0.11 -1.2 969,866 - MIT1002_00877 0.24 +0.8 969,961 - MIT1002_00877 0.37 -0.5 970,014 - MIT1002_00877 0.44 -0.1 970,112 - MIT1002_00877 0.58 -0.7 970,150 - MIT1002_00877 0.63 -1.8 970,150 - MIT1002_00877 0.63 -1.8 970,211 + MIT1002_00877 0.72 -0.6 970,211 + MIT1002_00877 0.72 +2.0 970,211 + MIT1002_00877 0.72 +1.0 970,211 + MIT1002_00877 0.72 +0.5 970,271 + MIT1002_00877 0.80 -1.0 970,288 + MIT1002_00877 0.83 -1.6 970,351 + -1.1 970,359 - +0.5 970,363 + +0.4 970,371 - +0.2 972,019 + +3.2 972,019 + +0.1 972,029 - +1.8 972,050 - -0.2 972,140 - -0.0 972,154 + -0.7 972,164 - -1.2 972,176 + -2.3 972,184 - -1.3 972,208 + -0.3 972,212 + +0.5 972,217 + +1.0 972,231 + MIT1002_00879 0.11 -3.0 972,231 + MIT1002_00879 0.11 -1.5 972,232 + MIT1002_00879 0.11 -3.3 972,248 + MIT1002_00879 0.13 -0.3 972,346 + MIT1002_00879 0.23 -2.0 972,354 - MIT1002_00879 0.24 -0.9 972,456 - MIT1002_00879 0.34 -1.6 972,470 - MIT1002_00879 0.36 -2.0 972,515 + MIT1002_00879 0.40 -1.9 972,515 + MIT1002_00879 0.40 -0.9 972,517 + MIT1002_00879 0.40 -3.4 972,523 - MIT1002_00879 0.41 -1.6 972,523 - MIT1002_00879 0.41 -1.9 972,530 - MIT1002_00879 0.42 -2.1 972,597 - MIT1002_00879 0.49 -2.0 972,627 - MIT1002_00879 0.52 -1.3 972,664 - MIT1002_00879 0.56 -0.6 972,722 - MIT1002_00879 0.61 -1.3 972,722 - MIT1002_00879 0.61 -2.9 972,745 + MIT1002_00879 0.64 -2.0 972,745 + MIT1002_00879 0.64 -0.8 972,750 + MIT1002_00879 0.64 -0.8 972,819 + MIT1002_00879 0.71 -1.6 972,840 + MIT1002_00879 0.74 -0.5 972,848 - MIT1002_00879 0.74 -3.0 972,894 - MIT1002_00879 0.79 -3.2 972,894 - MIT1002_00879 0.79 -2.8 973,023 + -3.1
Or see this region's nucleotide sequence