Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00875

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00874 and MIT1002_00875 overlap by 8 nucleotidesMIT1002_00875 and MIT1002_00876 are separated by 15 nucleotidesMIT1002_00876 and MIT1002_00877 are separated by 150 nucleotides MIT1002_00874: MIT1002_00874 - Phosphate transport system permease protein PstC, at 964,994 to 967,171 _00874 MIT1002_00875: MIT1002_00875 - Phosphate transport system permease protein PstA, at 967,164 to 968,723 _00875 MIT1002_00876: MIT1002_00876 - Phosphate import ATP-binding protein PstB 3, at 968,739 to 969,545 _00876 MIT1002_00877: MIT1002_00877 - Repressor protein PhoU, at 969,696 to 970,412 _00877 Position (kb) 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 966.242 kb on + strand, within MIT1002_00874at 966.281 kb on - strand, within MIT1002_00874at 966.281 kb on - strand, within MIT1002_00874at 966.283 kb on - strand, within MIT1002_00874at 966.306 kb on - strand, within MIT1002_00874at 966.550 kb on - strand, within MIT1002_00874at 966.573 kb on + strand, within MIT1002_00874at 966.573 kb on + strand, within MIT1002_00874at 966.578 kb on + strand, within MIT1002_00874at 966.603 kb on - strand, within MIT1002_00874at 966.718 kb on + strand, within MIT1002_00874at 966.718 kb on - strand, within MIT1002_00874at 966.738 kb on + strand, within MIT1002_00874at 966.746 kb on - strand, within MIT1002_00874at 966.842 kb on + strand, within MIT1002_00874at 966.878 kb on + strand, within MIT1002_00874at 966.891 kb on - strand, within MIT1002_00874at 966.919 kb on - strand, within MIT1002_00874at 966.945 kb on + strand, within MIT1002_00874at 967.117 kb on + strandat 967.141 kb on + strandat 967.141 kb on + strandat 967.192 kb on + strandat 967.192 kb on + strandat 967.192 kb on + strandat 967.197 kb on + strandat 967.349 kb on - strand, within MIT1002_00875at 967.359 kb on - strand, within MIT1002_00875at 967.430 kb on + strand, within MIT1002_00875at 967.434 kb on + strand, within MIT1002_00875at 967.533 kb on - strand, within MIT1002_00875at 967.561 kb on + strand, within MIT1002_00875at 967.579 kb on - strand, within MIT1002_00875at 967.589 kb on + strand, within MIT1002_00875at 967.604 kb on + strand, within MIT1002_00875at 967.638 kb on + strand, within MIT1002_00875at 967.663 kb on - strand, within MIT1002_00875at 967.791 kb on + strand, within MIT1002_00875at 967.791 kb on + strand, within MIT1002_00875at 967.939 kb on + strand, within MIT1002_00875at 967.978 kb on - strand, within MIT1002_00875at 967.982 kb on + strand, within MIT1002_00875at 967.987 kb on + strand, within MIT1002_00875at 967.995 kb on - strand, within MIT1002_00875at 967.997 kb on - strand, within MIT1002_00875at 968.012 kb on + strand, within MIT1002_00875at 968.069 kb on + strand, within MIT1002_00875at 968.087 kb on - strand, within MIT1002_00875at 968.104 kb on + strand, within MIT1002_00875at 968.128 kb on + strand, within MIT1002_00875at 968.174 kb on - strand, within MIT1002_00875at 968.244 kb on - strand, within MIT1002_00875at 968.244 kb on - strand, within MIT1002_00875at 968.256 kb on + strand, within MIT1002_00875at 968.256 kb on + strand, within MIT1002_00875at 968.256 kb on + strand, within MIT1002_00875at 968.256 kb on + strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.264 kb on - strand, within MIT1002_00875at 968.312 kb on - strand, within MIT1002_00875at 968.340 kb on - strand, within MIT1002_00875at 968.557 kb on - strand, within MIT1002_00875at 968.601 kb on + strandat 968.616 kb on + strandat 968.718 kb on + strandat 968.718 kb on + strandat 968.726 kb on - strandat 968.889 kb on + strand, within MIT1002_00876at 968.925 kb on - strand, within MIT1002_00876at 968.935 kb on - strand, within MIT1002_00876at 969.076 kb on - strand, within MIT1002_00876at 969.076 kb on - strand, within MIT1002_00876at 969.120 kb on - strand, within MIT1002_00876at 969.120 kb on - strand, within MIT1002_00876at 969.121 kb on - strand, within MIT1002_00876at 969.161 kb on + strand, within MIT1002_00876at 969.177 kb on - strand, within MIT1002_00876at 969.198 kb on + strand, within MIT1002_00876at 969.243 kb on + strand, within MIT1002_00876at 969.319 kb on - strand, within MIT1002_00876at 969.328 kb on - strand, within MIT1002_00876at 969.334 kb on - strand, within MIT1002_00876at 969.421 kb on + strand, within MIT1002_00876at 969.452 kb on + strand, within MIT1002_00876at 969.521 kb on + strandat 969.551 kb on - strandat 969.605 kb on + strandat 969.665 kb on + strandat 969.708 kb on + strandat 969.708 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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966,242 + MIT1002_00874 0.57 -1.3
966,281 - MIT1002_00874 0.59 +0.0
966,281 - MIT1002_00874 0.59 -0.2
966,283 - MIT1002_00874 0.59 +0.1
966,306 - MIT1002_00874 0.60 -0.3
966,550 - MIT1002_00874 0.71 -2.3
966,573 + MIT1002_00874 0.72 +0.1
966,573 + MIT1002_00874 0.72 -0.2
966,578 + MIT1002_00874 0.73 -0.1
966,603 - MIT1002_00874 0.74 -0.8
966,718 + MIT1002_00874 0.79 -0.5
966,718 - MIT1002_00874 0.79 -1.5
966,738 + MIT1002_00874 0.80 +0.0
966,746 - MIT1002_00874 0.80 -1.2
966,842 + MIT1002_00874 0.85 -0.9
966,878 + MIT1002_00874 0.87 -1.3
966,891 - MIT1002_00874 0.87 -1.2
966,919 - MIT1002_00874 0.88 -0.1
966,945 + MIT1002_00874 0.90 +0.8
967,117 + +1.0
967,141 + +1.0
967,141 + -0.2
967,192 + -0.8
967,192 + -0.5
967,192 + -1.0
967,197 + -0.0
967,349 - MIT1002_00875 0.12 +0.8
967,359 - MIT1002_00875 0.12 -1.9
967,430 + MIT1002_00875 0.17 -3.2
967,434 + MIT1002_00875 0.17 -0.2
967,533 - MIT1002_00875 0.24 -1.3
967,561 + MIT1002_00875 0.25 -0.1
967,579 - MIT1002_00875 0.27 -0.7
967,589 + MIT1002_00875 0.27 -1.5
967,604 + MIT1002_00875 0.28 -0.7
967,638 + MIT1002_00875 0.30 -1.6
967,663 - MIT1002_00875 0.32 -3.0
967,791 + MIT1002_00875 0.40 -1.0
967,791 + MIT1002_00875 0.40 -0.6
967,939 + MIT1002_00875 0.50 -1.2
967,978 - MIT1002_00875 0.52 -0.7
967,982 + MIT1002_00875 0.52 +0.0
967,987 + MIT1002_00875 0.53 -1.6
967,995 - MIT1002_00875 0.53 +0.4
967,997 - MIT1002_00875 0.53 +3.4
968,012 + MIT1002_00875 0.54 -0.4
968,069 + MIT1002_00875 0.58 -1.1
968,087 - MIT1002_00875 0.59 -1.1
968,104 + MIT1002_00875 0.60 -1.6
968,128 + MIT1002_00875 0.62 -0.6
968,174 - MIT1002_00875 0.65 -1.9
968,244 - MIT1002_00875 0.69 -1.3
968,244 - MIT1002_00875 0.69 -1.3
968,256 + MIT1002_00875 0.70 -2.5
968,256 + MIT1002_00875 0.70 -1.2
968,256 + MIT1002_00875 0.70 +1.4
968,256 + MIT1002_00875 0.70 -2.1
968,264 - MIT1002_00875 0.71 +0.5
968,264 - MIT1002_00875 0.71 +1.0
968,264 - MIT1002_00875 0.71 +1.0
968,264 - MIT1002_00875 0.71 -1.5
968,264 - MIT1002_00875 0.71 -1.3
968,264 - MIT1002_00875 0.71 -2.9
968,264 - MIT1002_00875 0.71 +0.5
968,264 - MIT1002_00875 0.71 -0.2
968,264 - MIT1002_00875 0.71 -0.2
968,264 - MIT1002_00875 0.71 -0.6
968,264 - MIT1002_00875 0.71 -1.4
968,264 - MIT1002_00875 0.71 -1.3
968,312 - MIT1002_00875 0.74 -0.1
968,340 - MIT1002_00875 0.75 -0.9
968,557 - MIT1002_00875 0.89 -2.7
968,601 + +0.0
968,616 + -0.4
968,718 + -1.2
968,718 + +2.0
968,726 - +0.7
968,889 + MIT1002_00876 0.19 -0.9
968,925 - MIT1002_00876 0.23 +0.4
968,935 - MIT1002_00876 0.24 -0.6
969,076 - MIT1002_00876 0.42 -2.0
969,076 - MIT1002_00876 0.42 -1.4
969,120 - MIT1002_00876 0.47 +0.4
969,120 - MIT1002_00876 0.47 -0.5
969,121 - MIT1002_00876 0.47 +2.6
969,161 + MIT1002_00876 0.52 +0.7
969,177 - MIT1002_00876 0.54 -0.6
969,198 + MIT1002_00876 0.57 -0.7
969,243 + MIT1002_00876 0.62 +0.4
969,319 - MIT1002_00876 0.72 -1.4
969,328 - MIT1002_00876 0.73 -0.2
969,334 - MIT1002_00876 0.74 +2.9
969,421 + MIT1002_00876 0.85 -0.4
969,452 + MIT1002_00876 0.88 -0.2
969,521 + -1.2
969,551 - +0.0
969,605 + -2.0
969,665 + +1.0
969,708 + -0.9
969,708 + -0.8

Or see this region's nucleotide sequence