Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00607 and MIT1002_00608 are separated by 27 nucleotides MIT1002_00608 and MIT1002_00609 are separated by 5 nucleotides MIT1002_00609 and MIT1002_00610 are separated by 81 nucleotides
MIT1002_00607: MIT1002_00607 - Cation efflux system protein CzcC, at 661,273 to 662,556
_00607
MIT1002_00608: MIT1002_00608 - heat shock protein HtpX, at 662,584 to 663,579
_00608
MIT1002_00609: MIT1002_00609 - Regulatory protein BlaI, at 663,585 to 663,965
_00609
MIT1002_00610: MIT1002_00610 - hypothetical protein, at 664,047 to 664,400
_00610
Position (kb) 662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.687 kb on + strand, within MIT1002_00607 at 661.695 kb on - strand, within MIT1002_00607 at 661.697 kb on + strand, within MIT1002_00607 at 661.705 kb on - strand, within MIT1002_00607 at 661.735 kb on - strand, within MIT1002_00607 at 661.754 kb on + strand, within MIT1002_00607 at 661.878 kb on - strand, within MIT1002_00607 at 661.880 kb on + strand, within MIT1002_00607 at 661.880 kb on + strand, within MIT1002_00607 at 661.888 kb on - strand, within MIT1002_00607 at 661.888 kb on - strand, within MIT1002_00607 at 661.888 kb on - strand, within MIT1002_00607 at 661.992 kb on + strand, within MIT1002_00607 at 661.994 kb on + strand, within MIT1002_00607 at 662.023 kb on + strand, within MIT1002_00607 at 662.081 kb on - strand, within MIT1002_00607 at 662.095 kb on - strand, within MIT1002_00607 at 662.105 kb on + strand, within MIT1002_00607 at 662.141 kb on + strand, within MIT1002_00607 at 662.141 kb on + strand, within MIT1002_00607 at 662.149 kb on - strand, within MIT1002_00607 at 662.189 kb on + strand, within MIT1002_00607 at 662.194 kb on + strand, within MIT1002_00607 at 662.209 kb on - strand, within MIT1002_00607 at 662.236 kb on + strand, within MIT1002_00607 at 662.244 kb on - strand, within MIT1002_00607 at 662.244 kb on - strand, within MIT1002_00607 at 662.250 kb on - strand, within MIT1002_00607 at 662.264 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.269 kb on + strand, within MIT1002_00607 at 662.274 kb on + strand, within MIT1002_00607 at 662.276 kb on + strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.277 kb on - strand, within MIT1002_00607 at 662.282 kb on - strand, within MIT1002_00607 at 662.282 kb on - strand, within MIT1002_00607 at 662.284 kb on - strand, within MIT1002_00607 at 662.287 kb on - strand, within MIT1002_00607 at 662.330 kb on - strand, within MIT1002_00607 at 662.332 kb on + strand, within MIT1002_00607 at 662.340 kb on + strand, within MIT1002_00607 at 662.348 kb on - strand, within MIT1002_00607 at 662.359 kb on - strand, within MIT1002_00607 at 662.417 kb on + strand, within MIT1002_00607 at 662.436 kb on + strand at 662.436 kb on + strand at 662.436 kb on - strand at 662.496 kb on - strand at 662.628 kb on + strand at 662.636 kb on - strand at 662.677 kb on + strand at 662.685 kb on - strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.745 kb on - strand, within MIT1002_00608 at 662.747 kb on + strand, within MIT1002_00608 at 662.796 kb on - strand, within MIT1002_00608 at 662.799 kb on + strand, within MIT1002_00608 at 662.807 kb on + strand, within MIT1002_00608 at 662.807 kb on - strand, within MIT1002_00608 at 662.854 kb on + strand, within MIT1002_00608 at 662.890 kb on - strand, within MIT1002_00608 at 662.980 kb on - strand, within MIT1002_00608 at 663.042 kb on + strand, within MIT1002_00608 at 663.252 kb on + strand, within MIT1002_00608 at 663.273 kb on + strand, within MIT1002_00608 at 663.355 kb on - strand, within MIT1002_00608 at 663.430 kb on + strand, within MIT1002_00608 at 663.438 kb on - strand, within MIT1002_00608 at 663.531 kb on + strand at 663.536 kb on - strand at 663.624 kb on + strand, within MIT1002_00609 at 663.668 kb on - strand, within MIT1002_00609 at 663.786 kb on - strand, within MIT1002_00609 at 663.807 kb on + strand, within MIT1002_00609 at 663.845 kb on + strand, within MIT1002_00609 at 663.865 kb on + strand, within MIT1002_00609 at 663.989 kb on + strand at 664.063 kb on - strand at 664.067 kb on + strand at 664.128 kb on - strand, within MIT1002_00610 at 664.256 kb on - strand, within MIT1002_00610 at 664.324 kb on + strand, within MIT1002_00610 at 664.324 kb on + strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.343 kb on - strand, within MIT1002_00610 at 664.353 kb on - strand, within MIT1002_00610 at 664.353 kb on - strand, within MIT1002_00610
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 661,687 + MIT1002_00607 0.32 -0.2 661,695 - MIT1002_00607 0.33 +0.3 661,697 + MIT1002_00607 0.33 -0.1 661,705 - MIT1002_00607 0.34 -1.1 661,735 - MIT1002_00607 0.36 -1.7 661,754 + MIT1002_00607 0.37 +1.5 661,878 - MIT1002_00607 0.47 +0.0 661,880 + MIT1002_00607 0.47 +0.3 661,880 + MIT1002_00607 0.47 +0.5 661,888 - MIT1002_00607 0.48 +1.4 661,888 - MIT1002_00607 0.48 -0.7 661,888 - MIT1002_00607 0.48 -0.3 661,992 + MIT1002_00607 0.56 -0.3 661,994 + MIT1002_00607 0.56 +1.0 662,023 + MIT1002_00607 0.58 -0.4 662,081 - MIT1002_00607 0.63 -0.2 662,095 - MIT1002_00607 0.64 +0.8 662,105 + MIT1002_00607 0.65 -0.2 662,141 + MIT1002_00607 0.68 +0.2 662,141 + MIT1002_00607 0.68 -1.4 662,149 - MIT1002_00607 0.68 +1.8 662,189 + MIT1002_00607 0.71 +0.5 662,194 + MIT1002_00607 0.72 +0.4 662,209 - MIT1002_00607 0.73 -0.1 662,236 + MIT1002_00607 0.75 +0.9 662,244 - MIT1002_00607 0.76 +1.0 662,244 - MIT1002_00607 0.76 +0.4 662,250 - MIT1002_00607 0.76 +0.3 662,264 + MIT1002_00607 0.77 -1.7 662,269 + MIT1002_00607 0.78 -1.4 662,269 + MIT1002_00607 0.78 +2.1 662,269 + MIT1002_00607 0.78 -0.6 662,269 + MIT1002_00607 0.78 +1.4 662,269 + MIT1002_00607 0.78 +1.5 662,269 + MIT1002_00607 0.78 -3.6 662,269 + MIT1002_00607 0.78 +1.0 662,269 + MIT1002_00607 0.78 -1.4 662,274 + MIT1002_00607 0.78 -0.3 662,276 + MIT1002_00607 0.78 +0.2 662,277 - MIT1002_00607 0.78 +0.8 662,277 - MIT1002_00607 0.78 +1.3 662,277 - MIT1002_00607 0.78 -1.2 662,277 - MIT1002_00607 0.78 -0.5 662,277 - MIT1002_00607 0.78 +0.5 662,277 - MIT1002_00607 0.78 +0.8 662,277 - MIT1002_00607 0.78 -2.1 662,277 - MIT1002_00607 0.78 +0.2 662,277 - MIT1002_00607 0.78 +0.8 662,277 - MIT1002_00607 0.78 +0.1 662,277 - MIT1002_00607 0.78 +0.8 662,282 - MIT1002_00607 0.79 +0.0 662,282 - MIT1002_00607 0.79 -0.9 662,284 - MIT1002_00607 0.79 +2.2 662,287 - MIT1002_00607 0.79 +0.4 662,330 - MIT1002_00607 0.82 +0.4 662,332 + MIT1002_00607 0.82 -1.1 662,340 + MIT1002_00607 0.83 -2.8 662,348 - MIT1002_00607 0.84 +0.2 662,359 - MIT1002_00607 0.85 -1.0 662,417 + MIT1002_00607 0.89 -2.3 662,436 + -1.1 662,436 + -0.7 662,436 - -0.3 662,496 - +0.1 662,628 + -1.1 662,636 - +0.6 662,677 + +0.5 662,685 - MIT1002_00608 0.10 -0.5 662,737 + MIT1002_00608 0.15 -1.5 662,737 + MIT1002_00608 0.15 -0.4 662,737 + MIT1002_00608 0.15 -0.2 662,737 + MIT1002_00608 0.15 +0.6 662,745 - MIT1002_00608 0.16 -0.0 662,747 + MIT1002_00608 0.16 +1.0 662,796 - MIT1002_00608 0.21 +1.0 662,799 + MIT1002_00608 0.22 -0.5 662,807 + MIT1002_00608 0.22 -1.2 662,807 - MIT1002_00608 0.22 -0.3 662,854 + MIT1002_00608 0.27 -0.2 662,890 - MIT1002_00608 0.31 -0.5 662,980 - MIT1002_00608 0.40 -0.0 663,042 + MIT1002_00608 0.46 +0.4 663,252 + MIT1002_00608 0.67 +0.6 663,273 + MIT1002_00608 0.69 -0.6 663,355 - MIT1002_00608 0.77 +0.5 663,430 + MIT1002_00608 0.85 +1.4 663,438 - MIT1002_00608 0.86 +0.0 663,531 + -0.4 663,536 - -1.4 663,624 + MIT1002_00609 0.10 +1.0 663,668 - MIT1002_00609 0.22 +0.9 663,786 - MIT1002_00609 0.53 -1.1 663,807 + MIT1002_00609 0.58 +0.6 663,845 + MIT1002_00609 0.68 -0.3 663,865 + MIT1002_00609 0.73 -0.2 663,989 + -0.9 664,063 - -1.9 664,067 + -2.2 664,128 - MIT1002_00610 0.23 +1.2 664,256 - MIT1002_00610 0.59 -0.8 664,324 + MIT1002_00610 0.78 +1.4 664,324 + MIT1002_00610 0.78 +0.2 664,332 - MIT1002_00610 0.81 +0.9 664,332 - MIT1002_00610 0.81 -1.2 664,332 - MIT1002_00610 0.81 +2.4 664,343 - MIT1002_00610 0.84 +1.2 664,353 - MIT1002_00610 0.86 -0.9 664,353 - MIT1002_00610 0.86 -0.2
Or see this region's nucleotide sequence