Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00606

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00605 and MIT1002_00606 are separated by 11 nucleotidesMIT1002_00606 and MIT1002_00607 are separated by 8 nucleotides MIT1002_00605: MIT1002_00605 - Cation efflux system protein CzcA, at 656,868 to 660,011 _00605 MIT1002_00606: MIT1002_00606 - Cation efflux system protein CzcB, at 660,023 to 661,264 _00606 MIT1002_00607: MIT1002_00607 - Cation efflux system protein CzcC, at 661,273 to 662,556 _00607 Position (kb) 660 661 662Strain fitness (log2 ratio) -2 -1 0 1 2 3at 659.027 kb on - strand, within MIT1002_00605at 659.027 kb on - strand, within MIT1002_00605at 659.027 kb on - strand, within MIT1002_00605at 659.044 kb on - strand, within MIT1002_00605at 659.052 kb on - strand, within MIT1002_00605at 659.052 kb on - strand, within MIT1002_00605at 659.087 kb on + strand, within MIT1002_00605at 659.107 kb on - strand, within MIT1002_00605at 659.107 kb on - strand, within MIT1002_00605at 659.107 kb on - strand, within MIT1002_00605at 659.117 kb on - strand, within MIT1002_00605at 659.117 kb on - strand, within MIT1002_00605at 659.124 kb on + strand, within MIT1002_00605at 659.137 kb on + strand, within MIT1002_00605at 659.142 kb on - strand, within MIT1002_00605at 659.187 kb on - strand, within MIT1002_00605at 659.192 kb on - strand, within MIT1002_00605at 659.212 kb on + strand, within MIT1002_00605at 659.213 kb on + strand, within MIT1002_00605at 659.221 kb on - strand, within MIT1002_00605at 659.221 kb on - strand, within MIT1002_00605at 659.225 kb on + strand, within MIT1002_00605at 659.233 kb on + strand, within MIT1002_00605at 659.233 kb on - strand, within MIT1002_00605at 659.233 kb on - strand, within MIT1002_00605at 659.257 kb on - strand, within MIT1002_00605at 659.317 kb on - strand, within MIT1002_00605at 659.365 kb on + strand, within MIT1002_00605at 659.378 kb on - strand, within MIT1002_00605at 659.378 kb on - strand, within MIT1002_00605at 659.384 kb on + strand, within MIT1002_00605at 659.481 kb on - strand, within MIT1002_00605at 659.489 kb on + strand, within MIT1002_00605at 659.508 kb on + strand, within MIT1002_00605at 659.508 kb on + strand, within MIT1002_00605at 659.508 kb on + strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.516 kb on - strand, within MIT1002_00605at 659.528 kb on + strand, within MIT1002_00605at 659.541 kb on + strand, within MIT1002_00605at 659.628 kb on - strand, within MIT1002_00605at 659.633 kb on + strand, within MIT1002_00605at 659.641 kb on - strand, within MIT1002_00605at 659.659 kb on - strand, within MIT1002_00605at 659.695 kb on + strand, within MIT1002_00605at 659.700 kb on + strandat 659.708 kb on - strandat 659.708 kb on - strandat 659.708 kb on - strandat 659.751 kb on + strandat 659.773 kb on - strandat 659.775 kb on - strandat 659.807 kb on + strandat 659.830 kb on + strandat 659.840 kb on + strandat 659.840 kb on + strandat 659.840 kb on + strandat 659.840 kb on + strandat 659.840 kb on + strandat 659.840 kb on + strandat 659.848 kb on - strandat 659.848 kb on - strandat 659.848 kb on - strandat 659.854 kb on + strandat 659.860 kb on + strandat 659.881 kb on - strandat 659.955 kb on - strandat 659.991 kb on + strandat 660.022 kb on + strandat 660.030 kb on - strandat 660.174 kb on - strand, within MIT1002_00606at 660.188 kb on + strand, within MIT1002_00606at 660.298 kb on - strand, within MIT1002_00606at 660.358 kb on + strand, within MIT1002_00606at 660.358 kb on + strand, within MIT1002_00606at 660.366 kb on - strand, within MIT1002_00606at 660.424 kb on + strand, within MIT1002_00606at 660.489 kb on + strand, within MIT1002_00606at 660.496 kb on + strand, within MIT1002_00606at 660.498 kb on + strand, within MIT1002_00606at 660.558 kb on - strand, within MIT1002_00606at 660.599 kb on - strand, within MIT1002_00606at 660.633 kb on - strand, within MIT1002_00606at 660.636 kb on + strand, within MIT1002_00606at 660.643 kb on + strand, within MIT1002_00606at 660.644 kb on - strand, within MIT1002_00606at 660.714 kb on + strand, within MIT1002_00606at 660.714 kb on + strand, within MIT1002_00606at 660.723 kb on - strand, within MIT1002_00606at 660.760 kb on + strand, within MIT1002_00606at 660.760 kb on + strand, within MIT1002_00606at 660.769 kb on + strand, within MIT1002_00606at 660.822 kb on - strand, within MIT1002_00606at 660.861 kb on + strand, within MIT1002_00606at 660.861 kb on + strand, within MIT1002_00606at 661.033 kb on - strand, within MIT1002_00606at 661.043 kb on - strand, within MIT1002_00606at 661.043 kb on - strand, within MIT1002_00606at 661.117 kb on + strand, within MIT1002_00606at 661.146 kb on + strandat 661.154 kb on - strandat 661.156 kb on + strandat 661.284 kb on + strandat 661.284 kb on + strandat 661.292 kb on - strandat 661.366 kb on + strandat 661.374 kb on - strandat 661.374 kb on - strandat 661.385 kb on + strandat 661.390 kb on + strandat 661.395 kb on + strandat 661.398 kb on - strandat 661.398 kb on - strandat 661.433 kb on + strand, within MIT1002_00607at 661.483 kb on + strand, within MIT1002_00607at 661.483 kb on + strand, within MIT1002_00607at 661.485 kb on + strand, within MIT1002_00607at 661.489 kb on - strand, within MIT1002_00607at 661.521 kb on + strand, within MIT1002_00607at 661.570 kb on + strand, within MIT1002_00607at 661.570 kb on + strand, within MIT1002_00607at 661.578 kb on - strand, within MIT1002_00607at 661.578 kb on - strand, within MIT1002_00607at 661.578 kb on - strand, within MIT1002_00607at 661.582 kb on - strand, within MIT1002_00607at 661.687 kb on + strand, within MIT1002_00607at 661.695 kb on - strand, within MIT1002_00607at 661.697 kb on + strand, within MIT1002_00607at 661.705 kb on - strand, within MIT1002_00607at 661.735 kb on - strand, within MIT1002_00607at 661.754 kb on + strand, within MIT1002_00607at 661.878 kb on - strand, within MIT1002_00607at 661.880 kb on + strand, within MIT1002_00607at 661.880 kb on + strand, within MIT1002_00607at 661.888 kb on - strand, within MIT1002_00607at 661.888 kb on - strand, within MIT1002_00607at 661.888 kb on - strand, within MIT1002_00607at 661.992 kb on + strand, within MIT1002_00607at 661.994 kb on + strand, within MIT1002_00607at 662.023 kb on + strand, within MIT1002_00607at 662.081 kb on - strand, within MIT1002_00607at 662.095 kb on - strand, within MIT1002_00607at 662.105 kb on + strand, within MIT1002_00607at 662.141 kb on + strand, within MIT1002_00607at 662.141 kb on + strand, within MIT1002_00607at 662.149 kb on - strand, within MIT1002_00607at 662.189 kb on + strand, within MIT1002_00607at 662.194 kb on + strand, within MIT1002_00607at 662.209 kb on - strand, within MIT1002_00607at 662.236 kb on + strand, within MIT1002_00607at 662.244 kb on - strand, within MIT1002_00607at 662.244 kb on - strand, within MIT1002_00607at 662.250 kb on - strand, within MIT1002_00607at 662.264 kb on + strand, within MIT1002_00607

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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659,027 - MIT1002_00605 0.69 -1.2
659,027 - MIT1002_00605 0.69 -0.4
659,027 - MIT1002_00605 0.69 +0.6
659,044 - MIT1002_00605 0.69 +0.4
659,052 - MIT1002_00605 0.69 +0.9
659,052 - MIT1002_00605 0.69 +0.7
659,087 + MIT1002_00605 0.71 -0.1
659,107 - MIT1002_00605 0.71 +0.7
659,107 - MIT1002_00605 0.71 -2.4
659,107 - MIT1002_00605 0.71 +0.5
659,117 - MIT1002_00605 0.72 +0.9
659,117 - MIT1002_00605 0.72 +0.1
659,124 + MIT1002_00605 0.72 -0.9
659,137 + MIT1002_00605 0.72 +0.3
659,142 - MIT1002_00605 0.72 +2.9
659,187 - MIT1002_00605 0.74 -0.1
659,192 - MIT1002_00605 0.74 +0.7
659,212 + MIT1002_00605 0.75 +0.8
659,213 + MIT1002_00605 0.75 -2.3
659,221 - MIT1002_00605 0.75 -1.6
659,221 - MIT1002_00605 0.75 +1.2
659,225 + MIT1002_00605 0.75 +0.3
659,233 + MIT1002_00605 0.75 -1.1
659,233 - MIT1002_00605 0.75 +0.2
659,233 - MIT1002_00605 0.75 +1.7
659,257 - MIT1002_00605 0.76 -0.2
659,317 - MIT1002_00605 0.78 +0.8
659,365 + MIT1002_00605 0.79 +0.3
659,378 - MIT1002_00605 0.80 +1.3
659,378 - MIT1002_00605 0.80 -0.6
659,384 + MIT1002_00605 0.80 -0.2
659,481 - MIT1002_00605 0.83 +1.6
659,489 + MIT1002_00605 0.83 -0.8
659,508 + MIT1002_00605 0.84 +0.3
659,508 + MIT1002_00605 0.84 -0.6
659,508 + MIT1002_00605 0.84 -0.1
659,516 - MIT1002_00605 0.84 -0.2
659,516 - MIT1002_00605 0.84 +0.1
659,516 - MIT1002_00605 0.84 +0.5
659,516 - MIT1002_00605 0.84 -0.9
659,516 - MIT1002_00605 0.84 -0.3
659,516 - MIT1002_00605 0.84 +0.2
659,516 - MIT1002_00605 0.84 +0.8
659,516 - MIT1002_00605 0.84 +0.8
659,528 + MIT1002_00605 0.85 +1.7
659,541 + MIT1002_00605 0.85 +0.5
659,628 - MIT1002_00605 0.88 -0.5
659,633 + MIT1002_00605 0.88 -0.1
659,641 - MIT1002_00605 0.88 -1.1
659,659 - MIT1002_00605 0.89 +0.5
659,695 + MIT1002_00605 0.90 -0.0
659,700 + -0.3
659,708 - -1.4
659,708 - +1.0
659,708 - +3.5
659,751 + -2.4
659,773 - +0.8
659,775 - -1.4
659,807 + -1.5
659,830 + -0.4
659,840 + +0.5
659,840 + +1.8
659,840 + +1.8
659,840 + -0.6
659,840 + -1.9
659,840 + +2.8
659,848 - -1.2
659,848 - +2.0
659,848 - -1.1
659,854 + +2.6
659,860 + -0.4
659,881 - -1.2
659,955 - -0.9
659,991 + +0.1
660,022 + +0.1
660,030 - -0.7
660,174 - MIT1002_00606 0.12 -1.3
660,188 + MIT1002_00606 0.13 -2.6
660,298 - MIT1002_00606 0.22 -1.5
660,358 + MIT1002_00606 0.27 -1.0
660,358 + MIT1002_00606 0.27 -0.3
660,366 - MIT1002_00606 0.28 +0.3
660,424 + MIT1002_00606 0.32 -0.8
660,489 + MIT1002_00606 0.38 +0.3
660,496 + MIT1002_00606 0.38 +0.2
660,498 + MIT1002_00606 0.38 -1.8
660,558 - MIT1002_00606 0.43 -0.3
660,599 - MIT1002_00606 0.46 -1.4
660,633 - MIT1002_00606 0.49 +0.3
660,636 + MIT1002_00606 0.49 -0.5
660,643 + MIT1002_00606 0.50 -1.3
660,644 - MIT1002_00606 0.50 -0.0
660,714 + MIT1002_00606 0.56 +1.1
660,714 + MIT1002_00606 0.56 +0.0
660,723 - MIT1002_00606 0.56 +0.0
660,760 + MIT1002_00606 0.59 +0.2
660,760 + MIT1002_00606 0.59 -0.2
660,769 + MIT1002_00606 0.60 -0.7
660,822 - MIT1002_00606 0.64 -0.6
660,861 + MIT1002_00606 0.67 -0.5
660,861 + MIT1002_00606 0.67 -1.2
661,033 - MIT1002_00606 0.81 -0.4
661,043 - MIT1002_00606 0.82 +0.9
661,043 - MIT1002_00606 0.82 -0.7
661,117 + MIT1002_00606 0.88 -0.1
661,146 + +0.4
661,154 - -0.2
661,156 + +0.8
661,284 + +0.4
661,284 + -0.6
661,292 - +0.4
661,366 + +0.2
661,374 - -0.8
661,374 - -0.5
661,385 + -0.1
661,390 + +1.4
661,395 + +0.5
661,398 - -1.8
661,398 - +1.3
661,433 + MIT1002_00607 0.12 +0.4
661,483 + MIT1002_00607 0.16 +0.4
661,483 + MIT1002_00607 0.16 +0.3
661,485 + MIT1002_00607 0.17 +1.1
661,489 - MIT1002_00607 0.17 +0.7
661,521 + MIT1002_00607 0.19 +1.5
661,570 + MIT1002_00607 0.23 -2.2
661,570 + MIT1002_00607 0.23 -1.9
661,578 - MIT1002_00607 0.24 +2.7
661,578 - MIT1002_00607 0.24 +0.4
661,578 - MIT1002_00607 0.24 -0.2
661,582 - MIT1002_00607 0.24 -0.0
661,687 + MIT1002_00607 0.32 -0.2
661,695 - MIT1002_00607 0.33 +0.3
661,697 + MIT1002_00607 0.33 -0.1
661,705 - MIT1002_00607 0.34 -1.1
661,735 - MIT1002_00607 0.36 -1.7
661,754 + MIT1002_00607 0.37 +1.5
661,878 - MIT1002_00607 0.47 +0.0
661,880 + MIT1002_00607 0.47 +0.3
661,880 + MIT1002_00607 0.47 +0.5
661,888 - MIT1002_00607 0.48 +1.4
661,888 - MIT1002_00607 0.48 -0.7
661,888 - MIT1002_00607 0.48 -0.3
661,992 + MIT1002_00607 0.56 -0.3
661,994 + MIT1002_00607 0.56 +1.0
662,023 + MIT1002_00607 0.58 -0.4
662,081 - MIT1002_00607 0.63 -0.2
662,095 - MIT1002_00607 0.64 +0.8
662,105 + MIT1002_00607 0.65 -0.2
662,141 + MIT1002_00607 0.68 +0.2
662,141 + MIT1002_00607 0.68 -1.4
662,149 - MIT1002_00607 0.68 +1.8
662,189 + MIT1002_00607 0.71 +0.5
662,194 + MIT1002_00607 0.72 +0.4
662,209 - MIT1002_00607 0.73 -0.1
662,236 + MIT1002_00607 0.75 +0.9
662,244 - MIT1002_00607 0.76 +1.0
662,244 - MIT1002_00607 0.76 +0.4
662,250 - MIT1002_00607 0.76 +0.3
662,264 + MIT1002_00607 0.77 -1.7

Or see this region's nucleotide sequence