Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00445 and MIT1002_00446 are separated by 226 nucleotides MIT1002_00446 and MIT1002_00447 are separated by 121 nucleotides
MIT1002_00445: MIT1002_00445 - DNA adenine methylase, at 485,743 to 486,624
_00445
MIT1002_00446: MIT1002_00446 - hypothetical protein, at 486,851 to 488,323
_00446
MIT1002_00447: MIT1002_00447 - 3-dehydroquinate synthase, at 488,445 to 489,512
_00447
Position (kb) 486
487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 486.558 kb on - strand at 486.633 kb on - strand at 486.866 kb on + strand at 486.977 kb on - strand at 486.999 kb on - strand, within MIT1002_00446 at 487.050 kb on - strand, within MIT1002_00446 at 487.070 kb on + strand, within MIT1002_00446 at 487.100 kb on + strand, within MIT1002_00446 at 487.105 kb on + strand, within MIT1002_00446 at 487.108 kb on - strand, within MIT1002_00446 at 487.123 kb on + strand, within MIT1002_00446 at 487.163 kb on + strand, within MIT1002_00446 at 487.208 kb on + strand, within MIT1002_00446 at 487.252 kb on + strand, within MIT1002_00446 at 487.252 kb on + strand, within MIT1002_00446 at 487.252 kb on + strand, within MIT1002_00446 at 487.260 kb on - strand, within MIT1002_00446 at 487.260 kb on - strand, within MIT1002_00446 at 487.274 kb on - strand, within MIT1002_00446 at 487.314 kb on - strand, within MIT1002_00446 at 487.394 kb on - strand, within MIT1002_00446 at 487.430 kb on + strand, within MIT1002_00446 at 487.456 kb on + strand, within MIT1002_00446 at 487.456 kb on + strand, within MIT1002_00446 at 487.464 kb on - strand, within MIT1002_00446 at 487.504 kb on - strand, within MIT1002_00446 at 487.504 kb on - strand, within MIT1002_00446 at 487.555 kb on - strand, within MIT1002_00446 at 487.565 kb on - strand, within MIT1002_00446 at 487.575 kb on - strand, within MIT1002_00446 at 487.635 kb on + strand, within MIT1002_00446 at 487.815 kb on + strand, within MIT1002_00446 at 487.815 kb on + strand, within MIT1002_00446 at 487.823 kb on - strand, within MIT1002_00446 at 487.823 kb on - strand, within MIT1002_00446 at 487.891 kb on + strand, within MIT1002_00446 at 487.905 kb on + strand, within MIT1002_00446 at 487.987 kb on - strand, within MIT1002_00446 at 487.987 kb on - strand, within MIT1002_00446 at 487.987 kb on - strand, within MIT1002_00446 at 488.020 kb on - strand, within MIT1002_00446 at 488.032 kb on - strand, within MIT1002_00446 at 488.151 kb on - strand, within MIT1002_00446 at 488.228 kb on + strand at 488.236 kb on - strand at 488.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 486,558 - -0.5 486,633 - +1.2 486,866 + -0.4 486,977 - -2.0 486,999 - MIT1002_00446 0.10 -2.0 487,050 - MIT1002_00446 0.14 +0.2 487,070 + MIT1002_00446 0.15 +1.1 487,100 + MIT1002_00446 0.17 -0.9 487,105 + MIT1002_00446 0.17 +0.7 487,108 - MIT1002_00446 0.17 -1.4 487,123 + MIT1002_00446 0.18 -1.2 487,163 + MIT1002_00446 0.21 +0.1 487,208 + MIT1002_00446 0.24 -1.4 487,252 + MIT1002_00446 0.27 -0.2 487,252 + MIT1002_00446 0.27 -1.0 487,252 + MIT1002_00446 0.27 +0.2 487,260 - MIT1002_00446 0.28 +0.2 487,260 - MIT1002_00446 0.28 -1.4 487,274 - MIT1002_00446 0.29 -2.6 487,314 - MIT1002_00446 0.31 -0.4 487,394 - MIT1002_00446 0.37 +0.3 487,430 + MIT1002_00446 0.39 -1.9 487,456 + MIT1002_00446 0.41 +0.4 487,456 + MIT1002_00446 0.41 -0.9 487,464 - MIT1002_00446 0.42 -0.6 487,504 - MIT1002_00446 0.44 -1.8 487,504 - MIT1002_00446 0.44 -1.6 487,555 - MIT1002_00446 0.48 +2.7 487,565 - MIT1002_00446 0.48 +0.3 487,575 - MIT1002_00446 0.49 -1.8 487,635 + MIT1002_00446 0.53 -1.3 487,815 + MIT1002_00446 0.65 -1.2 487,815 + MIT1002_00446 0.65 -2.8 487,823 - MIT1002_00446 0.66 -1.1 487,823 - MIT1002_00446 0.66 -1.3 487,891 + MIT1002_00446 0.71 -0.0 487,905 + MIT1002_00446 0.72 -0.9 487,987 - MIT1002_00446 0.77 -1.5 487,987 - MIT1002_00446 0.77 -1.0 487,987 - MIT1002_00446 0.77 +0.2 488,020 - MIT1002_00446 0.79 +1.6 488,032 - MIT1002_00446 0.80 -0.5 488,151 - MIT1002_00446 0.88 -1.8 488,228 + -0.8 488,236 - -1.2 488,348 + +2.8
Or see this region's nucleotide sequence