Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00202

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00200 and MIT1002_00201 are separated by 107 nucleotidesMIT1002_00201 and MIT1002_00202 are separated by 135 nucleotidesMIT1002_00202 and MIT1002_00203 are separated by 166 nucleotides MIT1002_00200: MIT1002_00200 - Aerobic glycerol-3-phosphate dehydrogenase, at 223,519 to 225,066 _00200 MIT1002_00201: MIT1002_00201 - hypothetical protein, at 225,174 to 225,758 _00201 MIT1002_00202: MIT1002_00202 - hypothetical protein, at 225,894 to 226,397 _00202 MIT1002_00203: MIT1002_00203 - hypothetical protein, at 226,564 to 227,478 _00203 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1 2at 225.049 kb on + strandat 225.090 kb on - strandat 225.090 kb on - strandat 225.153 kb on + strandat 225.153 kb on + strandat 225.161 kb on - strandat 225.244 kb on - strand, within MIT1002_00201at 225.296 kb on - strand, within MIT1002_00201at 225.343 kb on + strand, within MIT1002_00201at 225.385 kb on + strand, within MIT1002_00201at 225.410 kb on - strand, within MIT1002_00201at 225.432 kb on + strand, within MIT1002_00201at 225.483 kb on + strand, within MIT1002_00201at 225.501 kb on - strand, within MIT1002_00201at 225.507 kb on + strand, within MIT1002_00201at 225.507 kb on + strand, within MIT1002_00201at 225.510 kb on - strand, within MIT1002_00201at 225.514 kb on + strand, within MIT1002_00201at 225.515 kb on - strand, within MIT1002_00201at 225.515 kb on - strand, within MIT1002_00201at 225.543 kb on - strand, within MIT1002_00201at 225.578 kb on + strand, within MIT1002_00201at 225.596 kb on - strand, within MIT1002_00201at 225.633 kb on + strand, within MIT1002_00201at 225.636 kb on - strand, within MIT1002_00201at 225.659 kb on + strand, within MIT1002_00201at 225.904 kb on - strandat 225.944 kb on + strandat 225.978 kb on - strand, within MIT1002_00202at 225.978 kb on - strand, within MIT1002_00202at 226.126 kb on + strand, within MIT1002_00202at 226.165 kb on + strand, within MIT1002_00202at 226.189 kb on + strand, within MIT1002_00202at 226.203 kb on + strand, within MIT1002_00202at 226.242 kb on + strand, within MIT1002_00202at 226.261 kb on + strand, within MIT1002_00202at 226.269 kb on - strand, within MIT1002_00202at 226.280 kb on + strand, within MIT1002_00202at 226.280 kb on + strand, within MIT1002_00202at 226.559 kb on - strandat 226.618 kb on + strandat 226.638 kb on + strandat 226.659 kb on + strand, within MIT1002_00203at 226.744 kb on + strand, within MIT1002_00203at 226.798 kb on + strand, within MIT1002_00203at 226.803 kb on + strand, within MIT1002_00203at 226.816 kb on - strand, within MIT1002_00203at 226.821 kb on - strand, within MIT1002_00203at 226.845 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on + strand, within MIT1002_00203at 226.871 kb on - strand, within MIT1002_00203at 226.871 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.879 kb on - strand, within MIT1002_00203at 226.898 kb on - strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.909 kb on + strand, within MIT1002_00203at 226.917 kb on - strand, within MIT1002_00203at 226.941 kb on - strand, within MIT1002_00203at 226.941 kb on - strand, within MIT1002_00203at 226.966 kb on - strand, within MIT1002_00203at 226.983 kb on - strand, within MIT1002_00203at 227.007 kb on + strand, within MIT1002_00203at 227.061 kb on - strand, within MIT1002_00203at 227.083 kb on + strand, within MIT1002_00203at 227.116 kb on + strand, within MIT1002_00203at 227.126 kb on - strand, within MIT1002_00203at 227.232 kb on - strand, within MIT1002_00203at 227.269 kb on - strand, within MIT1002_00203

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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225,049 + +1.8
225,090 - +1.1
225,090 - +0.6
225,153 + +0.2
225,153 + -0.2
225,161 - +0.1
225,244 - MIT1002_00201 0.12 +1.4
225,296 - MIT1002_00201 0.21 +1.1
225,343 + MIT1002_00201 0.29 +0.4
225,385 + MIT1002_00201 0.36 -1.2
225,410 - MIT1002_00201 0.40 +1.1
225,432 + MIT1002_00201 0.44 -0.2
225,483 + MIT1002_00201 0.53 -1.6
225,501 - MIT1002_00201 0.56 +2.0
225,507 + MIT1002_00201 0.57 +0.2
225,507 + MIT1002_00201 0.57 +2.0
225,510 - MIT1002_00201 0.57 -0.6
225,514 + MIT1002_00201 0.58 -0.1
225,515 - MIT1002_00201 0.58 -0.1
225,515 - MIT1002_00201 0.58 -0.7
225,543 - MIT1002_00201 0.63 -2.4
225,578 + MIT1002_00201 0.69 +1.7
225,596 - MIT1002_00201 0.72 +0.3
225,633 + MIT1002_00201 0.78 +1.1
225,636 - MIT1002_00201 0.79 -0.1
225,659 + MIT1002_00201 0.83 -0.0
225,904 - +0.1
225,944 + +0.6
225,978 - MIT1002_00202 0.17 -0.5
225,978 - MIT1002_00202 0.17 -0.9
226,126 + MIT1002_00202 0.46 -1.2
226,165 + MIT1002_00202 0.54 -1.8
226,189 + MIT1002_00202 0.59 -1.3
226,203 + MIT1002_00202 0.61 +0.3
226,242 + MIT1002_00202 0.69 -0.7
226,261 + MIT1002_00202 0.73 -0.6
226,269 - MIT1002_00202 0.74 -0.3
226,280 + MIT1002_00202 0.77 -1.1
226,280 + MIT1002_00202 0.77 -0.9
226,559 - +1.7
226,618 + -0.2
226,638 + +1.1
226,659 + MIT1002_00203 0.10 +1.9
226,744 + MIT1002_00203 0.20 +0.5
226,798 + MIT1002_00203 0.26 +1.0
226,803 + MIT1002_00203 0.26 +0.4
226,816 - MIT1002_00203 0.28 +0.8
226,821 - MIT1002_00203 0.28 +0.7
226,845 + MIT1002_00203 0.31 +0.1
226,871 + MIT1002_00203 0.34 +1.1
226,871 + MIT1002_00203 0.34 +0.3
226,871 + MIT1002_00203 0.34 -0.0
226,871 - MIT1002_00203 0.34 +0.6
226,871 - MIT1002_00203 0.34 +0.3
226,879 - MIT1002_00203 0.34 +0.6
226,879 - MIT1002_00203 0.34 +1.2
226,879 - MIT1002_00203 0.34 -0.1
226,879 - MIT1002_00203 0.34 -0.4
226,898 - MIT1002_00203 0.37 -1.0
226,909 + MIT1002_00203 0.38 +1.1
226,909 + MIT1002_00203 0.38 -0.1
226,909 + MIT1002_00203 0.38 -1.8
226,909 + MIT1002_00203 0.38 -1.1
226,909 + MIT1002_00203 0.38 -1.0
226,909 + MIT1002_00203 0.38 +0.5
226,909 + MIT1002_00203 0.38 +1.1
226,917 - MIT1002_00203 0.39 -2.4
226,941 - MIT1002_00203 0.41 -0.0
226,941 - MIT1002_00203 0.41 -0.7
226,966 - MIT1002_00203 0.44 -0.9
226,983 - MIT1002_00203 0.46 -0.5
227,007 + MIT1002_00203 0.48 +1.4
227,061 - MIT1002_00203 0.54 +0.6
227,083 + MIT1002_00203 0.57 -0.8
227,116 + MIT1002_00203 0.60 -0.7
227,126 - MIT1002_00203 0.61 +1.8
227,232 - MIT1002_00203 0.73 -1.0
227,269 - MIT1002_00203 0.77 +1.4

Or see this region's nucleotide sequence