Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06524 and MPMX19_06525 are separated by 2 nucleotides MPMX19_06525 and MPMX19_06526 are separated by 10 nucleotides MPMX19_06526 and MPMX19_06527 overlap by 4 nucleotides
MPMX19_06524: MPMX19_06524 - hypothetical protein, at 310,367 to 311,845
_06524
MPMX19_06525: MPMX19_06525 - Adenine deaminase, at 311,848 to 313,527
_06525
MPMX19_06526: MPMX19_06526 - Putative aliphatic sulfonates transport permease protein SsuC, at 313,538 to 314,431
_06526
MPMX19_06527: MPMX19_06527 - Bicarbonate transport ATP-binding protein CmpD, at 314,428 to 315,225
_06527
Position (kb) 311
312
313
314 Strain fitness (log2 ratio) -2
-1
0
1 at 311.500 kb on - strand, within MPMX19_06524 at 311.568 kb on - strand, within MPMX19_06524 at 311.568 kb on - strand, within MPMX19_06524 at 311.694 kb on + strand, within MPMX19_06524 at 311.694 kb on + strand, within MPMX19_06524 at 311.694 kb on + strand, within MPMX19_06524 at 311.694 kb on + strand, within MPMX19_06524 at 311.694 kb on + strand, within MPMX19_06524 at 311.695 kb on - strand, within MPMX19_06524 at 311.695 kb on - strand, within MPMX19_06524 at 311.695 kb on - strand, within MPMX19_06524 at 311.695 kb on - strand, within MPMX19_06524 at 311.695 kb on - strand, within MPMX19_06524 at 311.695 kb on - strand, within MPMX19_06524 at 311.695 kb on - strand, within MPMX19_06524 at 312.108 kb on + strand, within MPMX19_06525 at 312.109 kb on - strand, within MPMX19_06525 at 312.237 kb on - strand, within MPMX19_06525 at 312.575 kb on + strand, within MPMX19_06525 at 312.812 kb on + strand, within MPMX19_06525 at 312.812 kb on + strand, within MPMX19_06525 at 312.812 kb on + strand, within MPMX19_06525 at 312.812 kb on + strand, within MPMX19_06525 at 312.812 kb on + strand, within MPMX19_06525 at 312.945 kb on - strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.076 kb on + strand, within MPMX19_06525 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.683 kb on + strand, within MPMX19_06526 at 313.769 kb on + strand, within MPMX19_06526 at 313.769 kb on + strand, within MPMX19_06526 at 313.769 kb on + strand, within MPMX19_06526 at 313.769 kb on + strand, within MPMX19_06526 at 313.769 kb on + strand, within MPMX19_06526 at 313.769 kb on + strand, within MPMX19_06526 at 313.770 kb on - strand, within MPMX19_06526 at 313.770 kb on - strand, within MPMX19_06526 at 313.770 kb on - strand, within MPMX19_06526 at 313.770 kb on - strand, within MPMX19_06526 at 313.852 kb on - strand, within MPMX19_06526 at 314.338 kb on + strand, within MPMX19_06526 at 314.504 kb on + strand at 314.504 kb on + strand at 314.505 kb on - strand at 314.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 311,500 - MPMX19_06524 0.77 +0.7 311,568 - MPMX19_06524 0.81 -2.0 311,568 - MPMX19_06524 0.81 -1.3 311,694 + MPMX19_06524 0.90 +0.5 311,694 + MPMX19_06524 0.90 -1.1 311,694 + MPMX19_06524 0.90 -0.9 311,694 + MPMX19_06524 0.90 -0.0 311,694 + MPMX19_06524 0.90 +0.3 311,695 - MPMX19_06524 0.90 +0.3 311,695 - MPMX19_06524 0.90 -1.3 311,695 - MPMX19_06524 0.90 -0.2 311,695 - MPMX19_06524 0.90 -0.3 311,695 - MPMX19_06524 0.90 -0.4 311,695 - MPMX19_06524 0.90 -1.9 311,695 - MPMX19_06524 0.90 +0.1 312,108 + MPMX19_06525 0.15 +0.1 312,109 - MPMX19_06525 0.16 -1.5 312,237 - MPMX19_06525 0.23 -0.9 312,575 + MPMX19_06525 0.43 +0.5 312,812 + MPMX19_06525 0.57 -0.2 312,812 + MPMX19_06525 0.57 -1.1 312,812 + MPMX19_06525 0.57 +0.8 312,812 + MPMX19_06525 0.57 -1.3 312,812 + MPMX19_06525 0.57 +0.1 312,945 - MPMX19_06525 0.65 +0.7 313,076 + MPMX19_06525 0.73 +0.4 313,076 + MPMX19_06525 0.73 +1.7 313,076 + MPMX19_06525 0.73 -1.0 313,076 + MPMX19_06525 0.73 -0.5 313,076 + MPMX19_06525 0.73 +0.2 313,076 + MPMX19_06525 0.73 -0.3 313,076 + MPMX19_06525 0.73 +0.1 313,076 + MPMX19_06525 0.73 -0.3 313,076 + MPMX19_06525 0.73 -0.3 313,683 + MPMX19_06526 0.16 -0.5 313,683 + MPMX19_06526 0.16 +1.2 313,683 + MPMX19_06526 0.16 -1.1 313,683 + MPMX19_06526 0.16 +0.5 313,683 + MPMX19_06526 0.16 +0.1 313,683 + MPMX19_06526 0.16 -0.2 313,683 + MPMX19_06526 0.16 -1.6 313,683 + MPMX19_06526 0.16 +0.4 313,683 + MPMX19_06526 0.16 -1.7 313,769 + MPMX19_06526 0.26 +0.4 313,769 + MPMX19_06526 0.26 +0.6 313,769 + MPMX19_06526 0.26 +1.5 313,769 + MPMX19_06526 0.26 -1.1 313,769 + MPMX19_06526 0.26 +0.7 313,769 + MPMX19_06526 0.26 +0.3 313,770 - MPMX19_06526 0.26 +1.2 313,770 - MPMX19_06526 0.26 +1.3 313,770 - MPMX19_06526 0.26 -0.9 313,770 - MPMX19_06526 0.26 +1.5 313,852 - MPMX19_06526 0.35 -0.6 314,338 + MPMX19_06526 0.89 -0.7 314,504 + -2.2 314,504 + -1.6 314,505 - +0.5 314,505 - +0.1
Or see this region's nucleotide sequence