Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06512 and MPMX19_06513 are separated by 9 nucleotides MPMX19_06513 and MPMX19_06514 are separated by 122 nucleotides
MPMX19_06512: MPMX19_06512 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 296,271 to 298,571
_06512
MPMX19_06513: MPMX19_06513 - putative N-succinyldiaminopimelate aminotransferase DapC, at 298,581 to 299,747
_06513
MPMX19_06514: MPMX19_06514 - L-methionine gamma-lyase, at 299,870 to 301,123
_06514
Position (kb)
298
299
300 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 297.855 kb on + strand, within MPMX19_06512 at 297.855 kb on + strand, within MPMX19_06512 at 298.173 kb on + strand, within MPMX19_06512 at 298.173 kb on + strand, within MPMX19_06512 at 298.173 kb on + strand, within MPMX19_06512 at 298.374 kb on + strand at 298.374 kb on + strand at 298.374 kb on + strand at 298.375 kb on - strand at 298.375 kb on - strand at 298.375 kb on - strand at 298.375 kb on - strand at 298.696 kb on + strand at 298.696 kb on + strand at 298.696 kb on + strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.697 kb on - strand at 298.807 kb on + strand, within MPMX19_06513 at 298.807 kb on + strand, within MPMX19_06513 at 298.807 kb on + strand, within MPMX19_06513 at 298.807 kb on + strand, within MPMX19_06513 at 298.807 kb on + strand, within MPMX19_06513 at 298.808 kb on - strand, within MPMX19_06513 at 298.808 kb on - strand, within MPMX19_06513 at 298.808 kb on - strand, within MPMX19_06513 at 298.808 kb on - strand, within MPMX19_06513 at 298.808 kb on - strand, within MPMX19_06513 at 298.808 kb on - strand, within MPMX19_06513 at 298.808 kb on - strand, within MPMX19_06513 at 298.975 kb on + strand, within MPMX19_06513 at 298.975 kb on + strand, within MPMX19_06513 at 298.975 kb on + strand, within MPMX19_06513 at 298.976 kb on - strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.026 kb on + strand, within MPMX19_06513 at 299.027 kb on - strand, within MPMX19_06513 at 299.027 kb on - strand, within MPMX19_06513 at 299.110 kb on + strand, within MPMX19_06513 at 299.110 kb on + strand, within MPMX19_06513 at 299.110 kb on + strand, within MPMX19_06513 at 299.111 kb on - strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.152 kb on + strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.153 kb on - strand, within MPMX19_06513 at 299.221 kb on - strand, within MPMX19_06513 at 299.384 kb on - strand, within MPMX19_06513 at 299.384 kb on - strand, within MPMX19_06513 at 299.392 kb on + strand, within MPMX19_06513 at 299.393 kb on - strand, within MPMX19_06513 at 299.689 kb on - strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.993 kb on + strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 299.994 kb on - strand at 300.050 kb on + strand, within MPMX19_06514 at 300.050 kb on + strand, within MPMX19_06514 at 300.050 kb on + strand, within MPMX19_06514 at 300.050 kb on + strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.051 kb on - strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.056 kb on + strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.057 kb on - strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.233 kb on + strand, within MPMX19_06514 at 300.234 kb on - strand, within MPMX19_06514 at 300.234 kb on - strand, within MPMX19_06514 at 300.234 kb on - strand, within MPMX19_06514 at 300.602 kb on + strand, within MPMX19_06514 at 300.603 kb on - strand, within MPMX19_06514 at 300.603 kb on - strand, within MPMX19_06514
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 297,855 + MPMX19_06512 0.69 -1.3 297,855 + MPMX19_06512 0.69 +0.1 298,173 + MPMX19_06512 0.83 -1.9 298,173 + MPMX19_06512 0.83 +0.4 298,173 + MPMX19_06512 0.83 -0.7 298,374 + -0.6 298,374 + -1.7 298,374 + -0.7 298,375 - -0.2 298,375 - -1.9 298,375 - -0.6 298,375 - +0.1 298,696 + +0.5 298,696 + -0.4 298,696 + +0.0 298,697 - +0.7 298,697 - +0.2 298,697 - +0.2 298,697 - +0.4 298,697 - +1.7 298,697 - -0.2 298,697 - +0.9 298,697 - -1.5 298,697 - +0.5 298,807 + MPMX19_06513 0.19 -0.3 298,807 + MPMX19_06513 0.19 -0.5 298,807 + MPMX19_06513 0.19 +0.6 298,807 + MPMX19_06513 0.19 +0.7 298,807 + MPMX19_06513 0.19 +0.3 298,808 - MPMX19_06513 0.19 -0.6 298,808 - MPMX19_06513 0.19 +0.1 298,808 - MPMX19_06513 0.19 -0.1 298,808 - MPMX19_06513 0.19 -0.8 298,808 - MPMX19_06513 0.19 -1.1 298,808 - MPMX19_06513 0.19 -0.2 298,808 - MPMX19_06513 0.19 -0.2 298,975 + MPMX19_06513 0.34 +1.1 298,975 + MPMX19_06513 0.34 +1.0 298,975 + MPMX19_06513 0.34 +0.5 298,976 - MPMX19_06513 0.34 -0.7 299,026 + MPMX19_06513 0.38 -0.1 299,026 + MPMX19_06513 0.38 +2.1 299,026 + MPMX19_06513 0.38 -0.3 299,026 + MPMX19_06513 0.38 -0.5 299,026 + MPMX19_06513 0.38 -0.1 299,027 - MPMX19_06513 0.38 +2.2 299,027 - MPMX19_06513 0.38 +0.7 299,110 + MPMX19_06513 0.45 +2.2 299,110 + MPMX19_06513 0.45 +1.3 299,110 + MPMX19_06513 0.45 -0.1 299,111 - MPMX19_06513 0.45 +1.0 299,152 + MPMX19_06513 0.49 +0.4 299,152 + MPMX19_06513 0.49 +1.4 299,152 + MPMX19_06513 0.49 -0.9 299,152 + MPMX19_06513 0.49 +1.1 299,153 - MPMX19_06513 0.49 -0.4 299,153 - MPMX19_06513 0.49 +0.2 299,153 - MPMX19_06513 0.49 +0.1 299,153 - MPMX19_06513 0.49 -0.5 299,221 - MPMX19_06513 0.55 -0.2 299,384 - MPMX19_06513 0.69 -0.4 299,384 - MPMX19_06513 0.69 -1.0 299,392 + MPMX19_06513 0.69 +1.1 299,393 - MPMX19_06513 0.70 +0.0 299,689 - -0.4 299,993 + -1.5 299,993 + -1.9 299,993 + -0.8 299,993 + -2.4 299,993 + -0.6 299,994 - +0.0 299,994 - +0.1 299,994 - +0.5 299,994 - +0.2 299,994 - -2.0 299,994 - +1.3 299,994 - +0.3 300,050 + MPMX19_06514 0.14 -2.0 300,050 + MPMX19_06514 0.14 -0.2 300,050 + MPMX19_06514 0.14 +0.3 300,050 + MPMX19_06514 0.14 -1.0 300,051 - MPMX19_06514 0.14 -0.3 300,051 - MPMX19_06514 0.14 -0.1 300,051 - MPMX19_06514 0.14 -0.6 300,051 - MPMX19_06514 0.14 +0.4 300,051 - MPMX19_06514 0.14 +0.5 300,051 - MPMX19_06514 0.14 -1.1 300,051 - MPMX19_06514 0.14 -1.2 300,051 - MPMX19_06514 0.14 +1.0 300,051 - MPMX19_06514 0.14 +0.5 300,051 - MPMX19_06514 0.14 +0.6 300,051 - MPMX19_06514 0.14 -0.9 300,056 + MPMX19_06514 0.15 -0.0 300,056 + MPMX19_06514 0.15 -0.2 300,056 + MPMX19_06514 0.15 +1.0 300,056 + MPMX19_06514 0.15 -0.6 300,056 + MPMX19_06514 0.15 +0.7 300,056 + MPMX19_06514 0.15 -1.7 300,056 + MPMX19_06514 0.15 -0.5 300,056 + MPMX19_06514 0.15 +0.9 300,056 + MPMX19_06514 0.15 +0.7 300,056 + MPMX19_06514 0.15 +0.1 300,057 - MPMX19_06514 0.15 +0.5 300,057 - MPMX19_06514 0.15 -0.3 300,057 - MPMX19_06514 0.15 -2.2 300,057 - MPMX19_06514 0.15 +0.3 300,057 - MPMX19_06514 0.15 +0.1 300,057 - MPMX19_06514 0.15 +3.7 300,057 - MPMX19_06514 0.15 +1.4 300,057 - MPMX19_06514 0.15 +0.1 300,233 + MPMX19_06514 0.29 +0.4 300,233 + MPMX19_06514 0.29 -0.1 300,233 + MPMX19_06514 0.29 -0.1 300,233 + MPMX19_06514 0.29 -1.5 300,234 - MPMX19_06514 0.29 -0.0 300,234 - MPMX19_06514 0.29 +1.6 300,234 - MPMX19_06514 0.29 -0.8 300,602 + MPMX19_06514 0.58 -0.8 300,603 - MPMX19_06514 0.58 -0.5 300,603 - MPMX19_06514 0.58 -1.6
Or see this region's nucleotide sequence