Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06486

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06484 and MPMX19_06485 are separated by 49 nucleotidesMPMX19_06485 and MPMX19_06486 are separated by 27 nucleotidesMPMX19_06486 and MPMX19_06487 are separated by 43 nucleotidesMPMX19_06487 and MPMX19_06488 are separated by 390 nucleotides MPMX19_06484: MPMX19_06484 - hypothetical protein, at 267,665 to 268,717 _06484 MPMX19_06485: MPMX19_06485 - putative malonic semialdehyde reductase RutE, at 268,767 to 269,402 _06485 MPMX19_06486: MPMX19_06486 - Phenylacetate-coenzyme A ligase, at 269,430 to 270,764 _06486 MPMX19_06487: MPMX19_06487 - hypothetical protein, at 270,808 to 271,050 _06487 MPMX19_06488: MPMX19_06488 - Taurine-binding periplasmic protein, at 271,441 to 272,457 _06488 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1 2at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.604 kb on + strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.605 kb on - strand, within MPMX19_06484at 268.607 kb on + strand, within MPMX19_06484at 268.607 kb on + strand, within MPMX19_06484at 268.607 kb on + strand, within MPMX19_06484at 268.608 kb on - strand, within MPMX19_06484at 268.608 kb on - strand, within MPMX19_06484at 268.967 kb on - strand, within MPMX19_06485at 268.967 kb on - strand, within MPMX19_06485at 268.967 kb on - strand, within MPMX19_06485at 269.048 kb on - strand, within MPMX19_06485at 269.048 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.059 kb on - strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.092 kb on + strand, within MPMX19_06485at 269.245 kb on + strand, within MPMX19_06485at 269.245 kb on + strand, within MPMX19_06485at 269.246 kb on - strand, within MPMX19_06485at 269.431 kb on + strandat 269.432 kb on - strandat 269.614 kb on - strand, within MPMX19_06486at 269.946 kb on - strand, within MPMX19_06486at 270.022 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.025 kb on + strand, within MPMX19_06486at 270.031 kb on + strand, within MPMX19_06486at 270.031 kb on + strand, within MPMX19_06486at 270.031 kb on + strand, within MPMX19_06486at 270.473 kb on - strand, within MPMX19_06486at 270.473 kb on - strand, within MPMX19_06486at 270.473 kb on - strand, within MPMX19_06486at 270.473 kb on - strand, within MPMX19_06486at 270.635 kb on - strandat 270.652 kb on + strandat 270.652 kb on + strandat 270.652 kb on + strandat 270.652 kb on + strandat 270.740 kb on - strandat 270.740 kb on - strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.787 kb on + strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 270.788 kb on - strandat 271.064 kb on - strandat 271.064 kb on - strandat 271.188 kb on - strandat 271.197 kb on + strandat 271.257 kb on + strandat 271.257 kb on + strandat 271.257 kb on + strandat 271.258 kb on - strandat 271.258 kb on - strandat 271.258 kb on - strandat 271.258 kb on - strandat 271.258 kb on - strandat 271.260 kb on - strandat 271.299 kb on - strandat 271.371 kb on + strandat 271.371 kb on + strandat 271.371 kb on + strandat 271.372 kb on - strandat 271.372 kb on - strandat 271.469 kb on - strandat 271.469 kb on - strandat 271.469 kb on - strandat 271.469 kb on - strandat 271.690 kb on + strand, within MPMX19_06488at 271.690 kb on + strand, within MPMX19_06488at 271.690 kb on + strand, within MPMX19_06488

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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268,604 + MPMX19_06484 0.89 -0.3
268,604 + MPMX19_06484 0.89 +1.1
268,604 + MPMX19_06484 0.89 +0.2
268,604 + MPMX19_06484 0.89 +1.1
268,604 + MPMX19_06484 0.89 -0.1
268,604 + MPMX19_06484 0.89 +1.0
268,605 - MPMX19_06484 0.89 +1.0
268,605 - MPMX19_06484 0.89 -0.3
268,605 - MPMX19_06484 0.89 -1.2
268,605 - MPMX19_06484 0.89 -0.3
268,605 - MPMX19_06484 0.89 -1.5
268,605 - MPMX19_06484 0.89 -0.3
268,605 - MPMX19_06484 0.89 -0.1
268,605 - MPMX19_06484 0.89 +0.4
268,605 - MPMX19_06484 0.89 -0.8
268,605 - MPMX19_06484 0.89 -0.2
268,605 - MPMX19_06484 0.89 -0.2
268,605 - MPMX19_06484 0.89 +0.2
268,605 - MPMX19_06484 0.89 -1.3
268,605 - MPMX19_06484 0.89 +0.0
268,607 + MPMX19_06484 0.89 -0.1
268,607 + MPMX19_06484 0.89 -2.1
268,607 + MPMX19_06484 0.89 -0.9
268,608 - MPMX19_06484 0.90 +0.1
268,608 - MPMX19_06484 0.90 -0.6
268,967 - MPMX19_06485 0.31 -0.1
268,967 - MPMX19_06485 0.31 -2.6
268,967 - MPMX19_06485 0.31 -0.7
269,048 - MPMX19_06485 0.44 -0.1
269,048 - MPMX19_06485 0.44 -0.6
269,059 - MPMX19_06485 0.46 +0.2
269,059 - MPMX19_06485 0.46 +1.0
269,059 - MPMX19_06485 0.46 -1.0
269,059 - MPMX19_06485 0.46 -0.4
269,059 - MPMX19_06485 0.46 -0.0
269,059 - MPMX19_06485 0.46 +0.9
269,092 + MPMX19_06485 0.51 +0.3
269,092 + MPMX19_06485 0.51 -0.9
269,092 + MPMX19_06485 0.51 -1.9
269,092 + MPMX19_06485 0.51 -0.5
269,245 + MPMX19_06485 0.75 -1.9
269,245 + MPMX19_06485 0.75 -0.1
269,246 - MPMX19_06485 0.75 -2.2
269,431 + -0.4
269,432 - -1.3
269,614 - MPMX19_06486 0.14 +0.4
269,946 - MPMX19_06486 0.39 +0.0
270,022 + MPMX19_06486 0.44 +0.1
270,025 + MPMX19_06486 0.45 +0.7
270,025 + MPMX19_06486 0.45 -0.1
270,025 + MPMX19_06486 0.45 -0.4
270,025 + MPMX19_06486 0.45 +0.3
270,025 + MPMX19_06486 0.45 +1.5
270,031 + MPMX19_06486 0.45 -0.1
270,031 + MPMX19_06486 0.45 +1.1
270,031 + MPMX19_06486 0.45 +1.5
270,473 - MPMX19_06486 0.78 -0.5
270,473 - MPMX19_06486 0.78 -0.2
270,473 - MPMX19_06486 0.78 -0.5
270,473 - MPMX19_06486 0.78 -0.7
270,635 - -0.7
270,652 + +1.0
270,652 + -0.0
270,652 + -1.3
270,652 + +0.2
270,740 - +0.4
270,740 - -0.4
270,787 + +0.4
270,787 + +1.3
270,787 + +1.4
270,787 + -0.2
270,787 + -1.7
270,787 + +0.7
270,787 + -0.6
270,787 + -0.6
270,787 + -1.3
270,787 + +0.7
270,787 + +0.9
270,787 + +0.2
270,787 + -0.4
270,787 + +0.8
270,787 + -2.1
270,787 + -0.2
270,787 + -0.3
270,787 + +0.1
270,787 + -1.3
270,787 + -0.9
270,787 + -0.0
270,787 + +1.3
270,787 + -1.6
270,788 - -0.3
270,788 - -0.1
270,788 - -0.0
270,788 - -0.3
270,788 - -0.7
270,788 - -1.2
270,788 - -1.6
270,788 - -1.7
270,788 - -0.4
270,788 - -0.6
270,788 - +2.1
270,788 - -1.3
271,064 - +0.4
271,064 - -1.7
271,188 - -0.3
271,197 + -0.1
271,257 + +0.0
271,257 + +0.6
271,257 + -0.3
271,258 - -0.7
271,258 - -0.9
271,258 - -0.5
271,258 - +0.5
271,258 - +1.3
271,260 - +0.1
271,299 - +1.0
271,371 + -1.0
271,371 + -1.2
271,371 + +0.6
271,372 - +0.7
271,372 - -1.7
271,469 - -2.4
271,469 - +0.8
271,469 - -0.4
271,469 - -1.5
271,690 + MPMX19_06488 0.24 +1.1
271,690 + MPMX19_06488 0.24 -1.2
271,690 + MPMX19_06488 0.24 +0.4

Or see this region's nucleotide sequence