Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06460 and MPMX19_06461 overlap by 1 nucleotides
MPMX19_06460: MPMX19_06460 - DNA-invertase hin, at 241,947 to 242,504
_06460
MPMX19_06461: MPMX19_06461 - Tn3 family transposase ISXc4, at 242,504 to 245,506
_06461
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2 at 240.991 kb on - strand at 241.011 kb on - strand at 241.040 kb on + strand at 241.040 kb on + strand at 241.041 kb on - strand at 241.055 kb on - strand at 241.115 kb on + strand at 241.116 kb on - strand at 241.116 kb on - strand at 241.117 kb on + strand at 241.117 kb on + strand at 241.117 kb on + strand at 241.117 kb on + strand at 241.118 kb on - strand at 241.220 kb on + strand at 241.221 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.291 kb on + strand at 241.291 kb on + strand at 241.292 kb on - strand at 241.302 kb on + strand at 241.303 kb on - strand at 241.303 kb on - strand at 241.316 kb on - strand at 241.417 kb on + strand at 241.417 kb on + strand at 241.442 kb on + strand at 241.481 kb on + strand at 241.499 kb on + strand at 241.499 kb on + strand at 241.499 kb on + strand at 241.499 kb on + strand at 241.500 kb on - strand at 241.579 kb on - strand at 241.617 kb on + strand at 241.638 kb on - strand at 241.638 kb on - strand at 241.829 kb on + strand at 241.829 kb on + strand at 241.830 kb on - strand at 241.834 kb on - strand at 241.834 kb on - strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.839 kb on + strand at 241.839 kb on + strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.850 kb on + strand at 241.850 kb on + strand at 241.851 kb on - strand at 241.870 kb on - strand at 241.870 kb on - strand at 241.899 kb on - strand at 241.911 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.927 kb on - strand at 241.946 kb on + strand at 241.946 kb on + strand at 241.947 kb on - strand at 241.947 kb on - strand at 241.954 kb on + strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 242.014 kb on + strand, within MPMX19_06460 at 242.014 kb on + strand, within MPMX19_06460 at 242.015 kb on - strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.359 kb on - strand, within MPMX19_06460 at 242.472 kb on + strand at 242.472 kb on + strand at 242.472 kb on + strand at 242.473 kb on - strand at 242.588 kb on + strand at 242.589 kb on - strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.837 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 243.022 kb on + strand, within MPMX19_06461 at 243.023 kb on - strand, within MPMX19_06461 at 243.335 kb on - strand, within MPMX19_06461
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 240,991 - +1.9 241,011 - +0.1 241,040 + +1.2 241,040 + -0.9 241,041 - +2.0 241,055 - +0.7 241,115 + -1.1 241,116 - -0.9 241,116 - -0.1 241,117 + +0.9 241,117 + +0.0 241,117 + -0.2 241,117 + -0.6 241,118 - -1.7 241,220 + +0.7 241,221 - +0.3 241,273 - +0.4 241,273 - +1.4 241,273 - -0.0 241,273 - +0.1 241,273 - -0.9 241,291 + +0.1 241,291 + +0.7 241,292 - +1.1 241,302 + +0.3 241,303 - +1.3 241,303 - -0.3 241,316 - -1.5 241,417 + -1.3 241,417 + +0.4 241,442 + -0.9 241,481 + +0.5 241,499 + -0.6 241,499 + -0.0 241,499 + +0.5 241,499 + +0.1 241,500 - +0.5 241,579 - -0.4 241,617 + +1.4 241,638 - +0.1 241,638 - -0.4 241,829 + +0.1 241,829 + -0.0 241,830 - +1.0 241,834 - +0.6 241,834 - -0.5 241,837 + -1.1 241,837 + +0.3 241,837 + -0.6 241,837 + -1.0 241,837 + -0.5 241,837 + +0.1 241,837 + -2.0 241,837 + +0.2 241,837 + +0.8 241,837 + -0.6 241,837 + -0.5 241,838 - +0.0 241,838 - +1.3 241,838 - +0.2 241,838 - -0.0 241,838 - +1.1 241,838 - +0.9 241,838 - -0.3 241,838 - -2.7 241,838 - -0.2 241,838 - +0.0 241,838 - +0.3 241,838 - -0.3 241,838 - +0.2 241,839 + +1.4 241,839 + +0.7 241,840 - +2.2 241,840 - -1.1 241,840 - +0.3 241,840 - +0.4 241,840 - -0.7 241,840 - -0.5 241,840 - +1.0 241,840 - -0.8 241,840 - -0.8 241,850 + -0.0 241,850 + -0.9 241,851 - -1.6 241,870 - -1.3 241,870 - -0.7 241,899 - -0.3 241,911 + -1.9 241,926 + -1.0 241,926 + +0.3 241,926 + +0.2 241,926 + -0.3 241,926 + -1.7 241,927 - -0.3 241,946 + +0.7 241,946 + +0.9 241,947 - +0.4 241,947 - +1.0 241,954 + +0.1 241,955 - +0.1 241,955 - -0.6 241,955 - -1.1 241,956 + -2.5 241,956 + -0.1 241,956 + -0.3 241,956 + +1.0 241,956 + +0.4 241,956 + +2.7 241,956 + -0.4 241,956 + +0.8 241,956 + -0.3 241,956 + +0.1 241,956 + -0.0 241,956 + +0.5 241,956 + -2.1 241,957 - -0.9 241,957 - -0.7 241,957 - -0.1 241,957 - +0.0 241,957 - -0.6 241,957 - -0.3 241,957 - +0.3 241,957 - +1.7 241,957 - -0.0 241,957 - +0.4 241,957 - -0.6 241,957 - -1.5 241,957 - -0.6 241,957 - +0.1 241,957 - +0.4 241,957 - +0.1 241,957 - -0.9 241,957 - -1.6 241,957 - +0.3 241,957 - -0.5 241,957 - -0.2 242,014 + MPMX19_06460 0.12 -1.0 242,014 + MPMX19_06460 0.12 -1.1 242,015 - MPMX19_06460 0.12 -0.6 242,358 + MPMX19_06460 0.74 -1.2 242,358 + MPMX19_06460 0.74 -0.3 242,358 + MPMX19_06460 0.74 +0.9 242,358 + MPMX19_06460 0.74 -1.0 242,358 + MPMX19_06460 0.74 -1.1 242,359 - MPMX19_06460 0.74 -0.6 242,472 + -1.7 242,472 + -2.4 242,472 + -0.1 242,473 - +0.3 242,588 + -0.5 242,589 - +0.4 242,786 + -0.3 242,786 + -1.6 242,786 + -0.3 242,786 + -0.3 242,786 + -0.9 242,786 + +0.8 242,786 + -1.1 242,786 + -0.5 242,786 + +1.5 242,786 + -0.7 242,786 + +1.7 242,786 + -2.0 242,786 + +0.9 242,786 + -1.3 242,787 - +1.7 242,787 - -0.4 242,787 - -0.6 242,787 - +1.0 242,787 - +0.3 242,787 - -0.7 242,837 + MPMX19_06461 0.11 -0.9 242,894 + MPMX19_06461 0.13 +1.2 242,894 + MPMX19_06461 0.13 +1.1 242,894 + MPMX19_06461 0.13 -0.2 242,894 + MPMX19_06461 0.13 -1.7 242,894 + MPMX19_06461 0.13 -0.8 242,895 - MPMX19_06461 0.13 +1.1 242,895 - MPMX19_06461 0.13 -1.1 242,895 - MPMX19_06461 0.13 -2.2 242,895 - MPMX19_06461 0.13 -0.5 242,895 - MPMX19_06461 0.13 -2.2 242,895 - MPMX19_06461 0.13 +1.1 242,895 - MPMX19_06461 0.13 +0.5 242,895 - MPMX19_06461 0.13 -0.2 242,895 - MPMX19_06461 0.13 +0.4 243,022 + MPMX19_06461 0.17 +0.5 243,023 - MPMX19_06461 0.17 +0.1 243,335 - MPMX19_06461 0.28 -2.5
Or see this region's nucleotide sequence