Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06454 and MPMX19_06455 are separated by 295 nucleotides MPMX19_06455 and MPMX19_06456 are separated by 57 nucleotides MPMX19_06456 and MPMX19_06457 are separated by 432 nucleotides
MPMX19_06454: MPMX19_06454 - hypothetical protein, at 228,605 to 230,290
_06454
MPMX19_06455: MPMX19_06455 - Tyrosine recombinase XerC, at 230,586 to 231,743
_06455
MPMX19_06456: MPMX19_06456 - hypothetical protein, at 231,801 to 232,160
_06456
MPMX19_06457: MPMX19_06457 - hypothetical protein, at 232,593 to 234,149
_06457
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 229.603 kb on + strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.724 kb on - strand, within MPMX19_06454 at 229.738 kb on + strand, within MPMX19_06454 at 229.739 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.974 kb on + strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 230.061 kb on - strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.092 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.176 kb on - strand at 230.176 kb on - strand at 230.176 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.405 kb on + strand at 230.406 kb on - strand at 230.800 kb on - strand, within MPMX19_06455 at 230.823 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 231.366 kb on + strand, within MPMX19_06455 at 231.366 kb on + strand, within MPMX19_06455 at 231.367 kb on - strand, within MPMX19_06455 at 231.367 kb on - strand, within MPMX19_06455 at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.669 kb on + strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.670 kb on - strand at 231.763 kb on + strand at 231.802 kb on + strand at 231.802 kb on + strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.803 kb on - strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.814 kb on + strand at 231.815 kb on - strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.826 kb on + strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.827 kb on - strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.832 kb on + strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.833 kb on - strand at 231.898 kb on + strand, within MPMX19_06456 at 231.898 kb on + strand, within MPMX19_06456 at 231.899 kb on - strand, within MPMX19_06456 at 232.170 kb on + strand at 232.171 kb on - strand at 232.209 kb on + strand at 232.209 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.338 kb on - strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.387 kb on + strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.388 kb on - strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.426 kb on + strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.427 kb on - strand at 232.465 kb on + strand at 232.487 kb on + strand at 232.487 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.506 kb on + strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.507 kb on - strand at 232.508 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.604 kb on - strand at 232.604 kb on - strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.640 kb on + strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.641 kb on - strand at 232.652 kb on + strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.653 kb on - strand at 232.686 kb on + strand at 232.686 kb on + strand at 232.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 229,603 + MPMX19_06454 0.59 +0.6 229,604 - MPMX19_06454 0.59 +2.3 229,604 - MPMX19_06454 0.59 +0.5 229,644 + MPMX19_06454 0.62 +0.3 229,644 + MPMX19_06454 0.62 +0.8 229,644 + MPMX19_06454 0.62 +1.0 229,644 + MPMX19_06454 0.62 -0.3 229,644 + MPMX19_06454 0.62 -0.1 229,644 + MPMX19_06454 0.62 +0.4 229,644 + MPMX19_06454 0.62 -0.2 229,644 + MPMX19_06454 0.62 -0.5 229,644 + MPMX19_06454 0.62 -2.7 229,644 + MPMX19_06454 0.62 +0.1 229,644 + MPMX19_06454 0.62 +0.3 229,644 + MPMX19_06454 0.62 -0.8 229,644 + MPMX19_06454 0.62 -0.2 229,644 + MPMX19_06454 0.62 -0.0 229,645 - MPMX19_06454 0.62 -0.1 229,645 - MPMX19_06454 0.62 -1.7 229,645 - MPMX19_06454 0.62 +0.7 229,645 - MPMX19_06454 0.62 +0.5 229,645 - MPMX19_06454 0.62 +0.1 229,645 - MPMX19_06454 0.62 -0.9 229,645 - MPMX19_06454 0.62 -0.5 229,645 - MPMX19_06454 0.62 -1.7 229,645 - MPMX19_06454 0.62 -0.9 229,645 - MPMX19_06454 0.62 -2.2 229,664 + MPMX19_06454 0.63 -0.4 229,664 + MPMX19_06454 0.63 -1.9 229,664 + MPMX19_06454 0.63 +0.0 229,665 - MPMX19_06454 0.63 +0.7 229,665 - MPMX19_06454 0.63 -1.3 229,665 - MPMX19_06454 0.63 -2.3 229,665 - MPMX19_06454 0.63 +0.7 229,723 + MPMX19_06454 0.66 +0.1 229,723 + MPMX19_06454 0.66 +0.1 229,723 + MPMX19_06454 0.66 +0.4 229,724 - MPMX19_06454 0.66 -0.2 229,738 + MPMX19_06454 0.67 -0.8 229,739 - MPMX19_06454 0.67 +0.0 229,853 - MPMX19_06454 0.74 -0.8 229,853 - MPMX19_06454 0.74 +0.4 229,974 + MPMX19_06454 0.81 -0.9 229,975 - MPMX19_06454 0.81 +0.5 229,975 - MPMX19_06454 0.81 -2.0 230,061 - MPMX19_06454 0.86 -1.9 230,091 + MPMX19_06454 0.88 -0.7 230,091 + MPMX19_06454 0.88 +0.8 230,092 - MPMX19_06454 0.88 +0.0 230,110 - MPMX19_06454 0.89 -1.7 230,110 - MPMX19_06454 0.89 -0.7 230,176 - -0.1 230,176 - -0.5 230,176 - -0.1 230,382 - -2.7 230,382 - -0.1 230,382 - -0.5 230,405 + -2.1 230,406 - -0.5 230,800 - MPMX19_06455 0.18 -1.0 230,823 + MPMX19_06455 0.20 +0.8 230,910 + MPMX19_06455 0.28 -0.9 230,910 + MPMX19_06455 0.28 -2.1 230,910 + MPMX19_06455 0.28 -0.1 230,910 + MPMX19_06455 0.28 -1.6 230,910 + MPMX19_06455 0.28 -0.7 230,910 + MPMX19_06455 0.28 -1.4 230,910 + MPMX19_06455 0.28 -1.3 230,910 + MPMX19_06455 0.28 -1.4 230,910 + MPMX19_06455 0.28 -0.5 230,911 - MPMX19_06455 0.28 +1.1 230,911 - MPMX19_06455 0.28 -2.5 230,911 - MPMX19_06455 0.28 +0.1 230,911 - MPMX19_06455 0.28 -0.6 230,911 - MPMX19_06455 0.28 -1.1 230,911 - MPMX19_06455 0.28 -0.5 230,911 - MPMX19_06455 0.28 -1.5 230,911 - MPMX19_06455 0.28 +0.1 230,911 - MPMX19_06455 0.28 -0.9 231,366 + MPMX19_06455 0.67 +0.3 231,366 + MPMX19_06455 0.67 -0.5 231,367 - MPMX19_06455 0.67 -0.8 231,367 - MPMX19_06455 0.67 -1.5 231,669 + -0.5 231,669 + -0.9 231,669 + +0.0 231,669 + -2.7 231,669 + +0.3 231,670 - +0.4 231,670 - -3.1 231,670 - -1.1 231,670 - -2.0 231,670 - -2.7 231,670 - -1.5 231,670 - +0.1 231,670 - +0.7 231,670 - +1.0 231,763 + -0.1 231,802 + -0.6 231,802 + -0.1 231,803 - +0.5 231,803 - -0.3 231,803 - -0.7 231,814 + +1.7 231,814 + -0.4 231,814 + +1.2 231,814 + -0.0 231,815 - -0.5 231,826 + -0.6 231,826 + -0.6 231,826 + -0.6 231,826 + +0.5 231,826 + +0.2 231,826 + +0.1 231,826 + +0.6 231,826 + -1.0 231,826 + -2.7 231,826 + -0.3 231,827 - -0.1 231,827 - +2.0 231,827 - -1.7 231,827 - -1.3 231,827 - -2.2 231,827 - -1.5 231,827 - -0.2 231,827 - -0.0 231,827 - -1.9 231,827 - +0.3 231,827 - +0.6 231,827 - -0.3 231,832 + +1.3 231,832 + +2.2 231,832 + +1.1 231,832 + -0.2 231,832 + +0.1 231,833 - -2.3 231,833 - -0.3 231,833 - +1.1 231,898 + MPMX19_06456 0.27 +0.3 231,898 + MPMX19_06456 0.27 +0.8 231,899 - MPMX19_06456 0.27 +0.5 232,170 + +0.6 232,171 - -0.9 232,209 + -2.1 232,209 + +0.1 232,288 + -1.8 232,288 + -0.0 232,338 - +0.6 232,387 + -0.5 232,387 + +0.5 232,387 + +0.3 232,387 + +0.7 232,387 + -0.2 232,387 + +0.3 232,387 + -0.3 232,387 + -1.1 232,388 - -2.0 232,388 - -1.7 232,388 - -0.7 232,388 - -0.8 232,388 - -0.6 232,388 - +0.3 232,388 - -0.1 232,388 - -0.3 232,388 - +0.8 232,388 - +0.1 232,388 - +0.7 232,426 + -0.4 232,426 + -0.3 232,426 + +1.0 232,427 - +0.1 232,427 - +0.3 232,427 - +0.2 232,465 + -1.6 232,487 + +0.8 232,487 + -0.1 232,506 + -0.8 232,506 + -0.8 232,506 + +1.0 232,507 - +0.2 232,507 - +0.1 232,507 - -0.8 232,507 - +0.7 232,507 - -0.5 232,507 - -1.3 232,507 - -0.5 232,507 - -0.8 232,507 - -0.7 232,508 + +0.1 232,598 + -0.3 232,598 + -1.1 232,598 + -0.3 232,604 - -0.4 232,604 - +0.1 232,640 + +0.9 232,640 + +1.7 232,640 + -1.7 232,641 - -0.7 232,641 - -1.6 232,641 - -0.8 232,652 + +0.6 232,653 - +0.6 232,653 - +1.7 232,653 - -1.0 232,686 + -0.7 232,686 + -0.0 232,687 - -0.0
Or see this region's nucleotide sequence