Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06422 and MPMX19_06423 are separated by 265 nucleotides MPMX19_06423 and MPMX19_06424 are separated by 19 nucleotides
MPMX19_06422: MPMX19_06422 - hypothetical protein, at 194,444 to 194,911
_06422
MPMX19_06423: MPMX19_06423 - hypothetical protein, at 195,177 to 195,776
_06423
MPMX19_06424: MPMX19_06424 - hypothetical protein, at 195,796 to 197,067
_06424
Position (kb) 194
195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.449 kb on + strand at 193.449 kb on + strand at 193.449 kb on + strand at 193.458 kb on + strand at 193.459 kb on - strand at 193.459 kb on - strand at 193.568 kb on - strand at 193.571 kb on + strand at 193.571 kb on + strand at 193.571 kb on + strand at 193.571 kb on + strand at 193.571 kb on + strand at 193.571 kb on + strand at 193.572 kb on - strand at 193.603 kb on + strand at 193.603 kb on + strand at 193.603 kb on + strand at 193.603 kb on + strand at 193.603 kb on + strand at 193.603 kb on + strand at 193.604 kb on - strand at 193.604 kb on - strand at 193.604 kb on - strand at 193.604 kb on - strand at 193.604 kb on - strand at 193.614 kb on + strand at 193.615 kb on - strand at 193.625 kb on - strand at 193.746 kb on + strand at 193.763 kb on + strand at 193.764 kb on - strand at 193.764 kb on - strand at 193.775 kb on + strand at 193.776 kb on - strand at 193.992 kb on + strand at 193.995 kb on + strand at 194.043 kb on + strand at 194.043 kb on + strand at 194.044 kb on - strand at 194.044 kb on - strand at 194.044 kb on - strand at 194.046 kb on + strand at 194.046 kb on + strand at 194.099 kb on - strand at 194.099 kb on - strand at 194.119 kb on - strand at 194.119 kb on - strand at 194.159 kb on + strand at 194.159 kb on + strand at 194.160 kb on - strand at 194.160 kb on - strand at 194.160 kb on - strand at 194.160 kb on - strand at 194.171 kb on - strand at 194.235 kb on + strand at 194.280 kb on + strand at 194.343 kb on - strand at 194.343 kb on - strand at 194.422 kb on + strand at 194.422 kb on + strand at 194.422 kb on + strand at 194.422 kb on + strand at 194.422 kb on + strand at 194.422 kb on + strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.423 kb on - strand at 194.531 kb on - strand, within MPMX19_06422 at 194.556 kb on + strand, within MPMX19_06422 at 194.662 kb on + strand, within MPMX19_06422 at 194.662 kb on + strand, within MPMX19_06422 at 194.822 kb on + strand, within MPMX19_06422 at 194.822 kb on + strand, within MPMX19_06422 at 194.823 kb on - strand, within MPMX19_06422 at 194.823 kb on - strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.848 kb on - strand, within MPMX19_06422 at 194.848 kb on - strand, within MPMX19_06422 at 194.992 kb on - strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.143 kb on - strand at 195.341 kb on + strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.365 kb on + strand, within MPMX19_06423 at 195.439 kb on + strand, within MPMX19_06423 at 195.439 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.521 kb on + strand, within MPMX19_06423 at 195.521 kb on + strand, within MPMX19_06423 at 195.521 kb on + strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.568 kb on + strand, within MPMX19_06423 at 195.568 kb on + strand, within MPMX19_06423 at 195.569 kb on - strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.885 kb on - strand at 195.893 kb on + strand at 195.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 193,449 + +1.2 193,449 + +1.3 193,449 + +0.2 193,458 + -0.9 193,459 - -1.5 193,459 - +0.9 193,568 - +0.1 193,571 + -1.4 193,571 + +0.1 193,571 + +0.9 193,571 + +0.1 193,571 + +0.5 193,571 + -0.2 193,572 - +0.9 193,603 + -0.5 193,603 + -1.3 193,603 + -0.4 193,603 + -0.9 193,603 + -1.7 193,603 + -1.1 193,604 - -1.6 193,604 - +0.5 193,604 - +0.3 193,604 - -1.5 193,604 - +1.7 193,614 + -1.5 193,615 - -1.0 193,625 - -0.8 193,746 + -1.1 193,763 + -0.6 193,764 - +0.4 193,764 - -0.5 193,775 + -0.6 193,776 - -0.6 193,992 + -1.1 193,995 + -0.7 194,043 + +0.3 194,043 + -0.1 194,044 - +1.1 194,044 - -2.1 194,044 - +0.1 194,046 + -1.5 194,046 + -1.2 194,099 - -0.2 194,099 - +2.4 194,119 - -0.1 194,119 - +0.8 194,159 + -1.9 194,159 + -0.1 194,160 - +0.5 194,160 - +0.7 194,160 - +0.3 194,160 - -0.9 194,171 - +0.1 194,235 + -0.4 194,280 + +0.4 194,343 - -0.7 194,343 - +0.0 194,422 + -1.6 194,422 + -1.8 194,422 + +0.7 194,422 + -1.0 194,422 + -0.9 194,422 + -2.5 194,423 - +0.6 194,423 - -1.5 194,423 - -1.2 194,423 - -1.0 194,423 - -2.6 194,423 - -0.5 194,423 - -0.7 194,423 - +0.7 194,423 - -0.1 194,423 - +0.7 194,423 - -0.7 194,531 - MPMX19_06422 0.19 -1.9 194,556 + MPMX19_06422 0.24 -1.0 194,662 + MPMX19_06422 0.47 +0.7 194,662 + MPMX19_06422 0.47 -0.7 194,822 + MPMX19_06422 0.81 -0.5 194,822 + MPMX19_06422 0.81 -0.2 194,823 - MPMX19_06422 0.81 -1.4 194,823 - MPMX19_06422 0.81 -1.5 194,847 + MPMX19_06422 0.86 -0.9 194,847 + MPMX19_06422 0.86 +0.6 194,847 + MPMX19_06422 0.86 -1.1 194,847 + MPMX19_06422 0.86 -0.9 194,847 + MPMX19_06422 0.86 -0.9 194,847 + MPMX19_06422 0.86 -0.7 194,848 - MPMX19_06422 0.86 -2.0 194,848 - MPMX19_06422 0.86 +0.1 194,992 - +1.0 195,105 + -2.3 195,105 + +1.5 195,105 + -0.2 195,105 + +0.3 195,105 + -0.7 195,106 - +0.5 195,106 - +0.4 195,106 - -0.7 195,106 - -0.5 195,106 - -0.1 195,106 - -0.4 195,106 - -1.9 195,106 - +0.5 195,106 - -0.2 195,106 - -0.1 195,106 - -1.6 195,143 - -1.9 195,341 + MPMX19_06423 0.27 +0.3 195,342 - MPMX19_06423 0.28 -0.6 195,342 - MPMX19_06423 0.28 -0.3 195,342 - MPMX19_06423 0.28 -1.3 195,342 - MPMX19_06423 0.28 +0.5 195,365 + MPMX19_06423 0.31 +0.6 195,439 + MPMX19_06423 0.44 -0.1 195,439 + MPMX19_06423 0.44 -0.7 195,519 + MPMX19_06423 0.57 +1.5 195,519 + MPMX19_06423 0.57 +0.1 195,519 + MPMX19_06423 0.57 -0.7 195,519 + MPMX19_06423 0.57 -2.0 195,519 + MPMX19_06423 0.57 -0.8 195,519 + MPMX19_06423 0.57 +0.4 195,519 + MPMX19_06423 0.57 -0.1 195,519 + MPMX19_06423 0.57 +0.1 195,519 + MPMX19_06423 0.57 +0.8 195,520 - MPMX19_06423 0.57 -1.6 195,520 - MPMX19_06423 0.57 -1.1 195,520 - MPMX19_06423 0.57 +0.3 195,520 - MPMX19_06423 0.57 +0.5 195,520 - MPMX19_06423 0.57 -0.2 195,520 - MPMX19_06423 0.57 -0.7 195,520 - MPMX19_06423 0.57 +0.4 195,520 - MPMX19_06423 0.57 +0.6 195,520 - MPMX19_06423 0.57 -0.6 195,520 - MPMX19_06423 0.57 -0.2 195,520 - MPMX19_06423 0.57 -2.5 195,520 - MPMX19_06423 0.57 -0.5 195,520 - MPMX19_06423 0.57 -0.9 195,521 + MPMX19_06423 0.57 -1.1 195,521 + MPMX19_06423 0.57 +1.0 195,521 + MPMX19_06423 0.57 -0.3 195,522 - MPMX19_06423 0.57 -0.1 195,522 - MPMX19_06423 0.57 +0.4 195,522 - MPMX19_06423 0.57 +0.5 195,522 - MPMX19_06423 0.57 -1.0 195,568 + MPMX19_06423 0.65 -0.0 195,568 + MPMX19_06423 0.65 +0.0 195,569 - MPMX19_06423 0.65 -1.5 195,661 + MPMX19_06423 0.81 -2.3 195,661 + MPMX19_06423 0.81 -0.4 195,661 + MPMX19_06423 0.81 -0.4 195,661 + MPMX19_06423 0.81 -0.9 195,661 + MPMX19_06423 0.81 +1.4 195,885 - +0.3 195,893 + -1.6 195,894 - +0.1
Or see this region's nucleotide sequence