Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06355

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06354 and MPMX19_06355 are separated by 881 nucleotidesMPMX19_06355 and MPMX19_06356 overlap by 16 nucleotides MPMX19_06354: MPMX19_06354 - Methyl-accepting chemotaxis protein, at 119,556 to 121,403 _06354 MPMX19_06355: MPMX19_06355 - hypothetical protein, at 122,285 to 122,623 _06355 MPMX19_06356: MPMX19_06356 - hypothetical protein, at 122,608 to 123,846 _06356 Position (kb) 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 121.564 kb on + strandat 121.564 kb on + strandat 121.643 kb on - strandat 121.741 kb on + strandat 121.742 kb on - strandat 121.820 kb on + strandat 121.820 kb on + strandat 121.820 kb on + strandat 121.820 kb on + strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.841 kb on + strandat 121.841 kb on + strandat 121.841 kb on + strandat 121.842 kb on - strandat 121.923 kb on + strandat 121.923 kb on + strandat 121.923 kb on + strandat 122.195 kb on + strandat 122.195 kb on + strandat 122.196 kb on - strandat 122.196 kb on - strandat 122.196 kb on - strandat 122.196 kb on - strandat 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.519 kb on + strand, within MPMX19_06355at 122.520 kb on - strand, within MPMX19_06355at 122.581 kb on - strand, within MPMX19_06355at 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.711 kb on + strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.712 kb on - strandat 122.807 kb on + strand, within MPMX19_06356at 122.808 kb on - strand, within MPMX19_06356at 122.808 kb on - strand, within MPMX19_06356at 122.808 kb on - strand, within MPMX19_06356at 122.879 kb on + strand, within MPMX19_06356at 122.879 kb on + strand, within MPMX19_06356at 122.879 kb on + strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 122.880 kb on - strand, within MPMX19_06356at 123.104 kb on + strand, within MPMX19_06356at 123.104 kb on + strand, within MPMX19_06356at 123.104 kb on + strand, within MPMX19_06356at 123.105 kb on - strand, within MPMX19_06356at 123.105 kb on - strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.137 kb on + strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.138 kb on - strand, within MPMX19_06356at 123.140 kb on + strand, within MPMX19_06356at 123.140 kb on + strand, within MPMX19_06356at 123.140 kb on + strand, within MPMX19_06356at 123.141 kb on - strand, within MPMX19_06356at 123.141 kb on - strand, within MPMX19_06356at 123.318 kb on + strand, within MPMX19_06356at 123.431 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.464 kb on + strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356at 123.465 kb on - strand, within MPMX19_06356

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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121,564 + -0.5
121,564 + +0.9
121,643 - -0.6
121,741 + +1.9
121,742 - -1.4
121,820 + -0.6
121,820 + +0.1
121,820 + -0.1
121,820 + +0.1
121,821 - -0.4
121,821 - -0.2
121,821 - -0.1
121,821 - +0.4
121,821 - -0.5
121,841 + -0.3
121,841 + +0.4
121,841 + -0.5
121,842 - +0.1
121,923 + -0.3
121,923 + -0.3
121,923 + -0.1
122,195 + -0.0
122,195 + -1.6
122,196 - +0.2
122,196 - +0.0
122,196 - +1.0
122,196 - -1.0
122,354 + MPMX19_06355 0.20 +1.1
122,354 + MPMX19_06355 0.20 -0.5
122,354 + MPMX19_06355 0.20 -0.1
122,354 + MPMX19_06355 0.20 -0.0
122,354 + MPMX19_06355 0.20 +1.3
122,354 + MPMX19_06355 0.20 +0.2
122,354 + MPMX19_06355 0.20 +1.4
122,354 + MPMX19_06355 0.20 -0.4
122,354 + MPMX19_06355 0.20 -1.5
122,354 + MPMX19_06355 0.20 +0.8
122,355 - MPMX19_06355 0.21 -0.2
122,355 - MPMX19_06355 0.21 +0.2
122,355 - MPMX19_06355 0.21 +1.0
122,355 - MPMX19_06355 0.21 +0.0
122,355 - MPMX19_06355 0.21 -0.3
122,519 + MPMX19_06355 0.69 +1.2
122,520 - MPMX19_06355 0.69 -1.1
122,581 - MPMX19_06355 0.87 -0.1
122,711 + -0.9
122,711 + -1.1
122,711 + -0.0
122,711 + -0.1
122,711 + -0.8
122,711 + +0.8
122,711 + +0.5
122,711 + +0.1
122,711 + -0.5
122,711 + -0.5
122,711 + -0.5
122,711 + +0.3
122,712 - -1.5
122,712 - -0.2
122,712 - -0.6
122,712 - -1.1
122,712 - -1.1
122,712 - -0.4
122,712 - +0.2
122,712 - +1.2
122,712 - -0.3
122,712 - -0.7
122,712 - +0.5
122,712 - +1.0
122,807 + MPMX19_06356 0.16 -0.9
122,808 - MPMX19_06356 0.16 -0.4
122,808 - MPMX19_06356 0.16 -0.7
122,808 - MPMX19_06356 0.16 +0.2
122,879 + MPMX19_06356 0.22 +0.3
122,879 + MPMX19_06356 0.22 -0.7
122,879 + MPMX19_06356 0.22 +0.2
122,880 - MPMX19_06356 0.22 -0.3
122,880 - MPMX19_06356 0.22 -0.7
122,880 - MPMX19_06356 0.22 -0.2
122,880 - MPMX19_06356 0.22 -0.6
123,104 + MPMX19_06356 0.40 +0.3
123,104 + MPMX19_06356 0.40 -0.7
123,104 + MPMX19_06356 0.40 -0.2
123,105 - MPMX19_06356 0.40 -2.6
123,105 - MPMX19_06356 0.40 -1.4
123,137 + MPMX19_06356 0.43 -0.9
123,137 + MPMX19_06356 0.43 -0.9
123,137 + MPMX19_06356 0.43 +0.1
123,137 + MPMX19_06356 0.43 -0.3
123,137 + MPMX19_06356 0.43 +0.4
123,138 - MPMX19_06356 0.43 +1.1
123,138 - MPMX19_06356 0.43 -2.4
123,138 - MPMX19_06356 0.43 -0.1
123,138 - MPMX19_06356 0.43 -1.1
123,138 - MPMX19_06356 0.43 -2.4
123,140 + MPMX19_06356 0.43 +0.9
123,140 + MPMX19_06356 0.43 +0.7
123,140 + MPMX19_06356 0.43 -2.3
123,141 - MPMX19_06356 0.43 +0.7
123,141 - MPMX19_06356 0.43 -1.2
123,318 + MPMX19_06356 0.57 -1.1
123,431 + MPMX19_06356 0.66 +0.4
123,464 + MPMX19_06356 0.69 -1.1
123,464 + MPMX19_06356 0.69 -0.1
123,464 + MPMX19_06356 0.69 -0.1
123,464 + MPMX19_06356 0.69 +0.8
123,464 + MPMX19_06356 0.69 -1.6
123,464 + MPMX19_06356 0.69 -0.6
123,464 + MPMX19_06356 0.69 +0.2
123,464 + MPMX19_06356 0.69 +0.3
123,464 + MPMX19_06356 0.69 +0.5
123,464 + MPMX19_06356 0.69 +0.3
123,464 + MPMX19_06356 0.69 -0.7
123,464 + MPMX19_06356 0.69 -1.3
123,464 + MPMX19_06356 0.69 +0.3
123,465 - MPMX19_06356 0.69 -1.0
123,465 - MPMX19_06356 0.69 +1.0
123,465 - MPMX19_06356 0.69 +0.9
123,465 - MPMX19_06356 0.69 -1.4
123,465 - MPMX19_06356 0.69 -0.2
123,465 - MPMX19_06356 0.69 -0.2
123,465 - MPMX19_06356 0.69 -0.3
123,465 - MPMX19_06356 0.69 -0.5

Or see this region's nucleotide sequence