Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06354 and MPMX19_06355 are separated by 881 nucleotides MPMX19_06355 and MPMX19_06356 overlap by 16 nucleotides
MPMX19_06354: MPMX19_06354 - Methyl-accepting chemotaxis protein, at 119,556 to 121,403
_06354
MPMX19_06355: MPMX19_06355 - hypothetical protein, at 122,285 to 122,623
_06355
MPMX19_06356: MPMX19_06356 - hypothetical protein, at 122,608 to 123,846
_06356
Position (kb) 122
123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.564 kb on + strand at 121.564 kb on + strand at 121.643 kb on - strand at 121.741 kb on + strand at 121.742 kb on - strand at 121.820 kb on + strand at 121.820 kb on + strand at 121.820 kb on + strand at 121.820 kb on + strand at 121.821 kb on - strand at 121.821 kb on - strand at 121.821 kb on - strand at 121.821 kb on - strand at 121.821 kb on - strand at 121.841 kb on + strand at 121.841 kb on + strand at 121.841 kb on + strand at 121.842 kb on - strand at 121.923 kb on + strand at 121.923 kb on + strand at 121.923 kb on + strand at 122.195 kb on + strand at 122.195 kb on + strand at 122.196 kb on - strand at 122.196 kb on - strand at 122.196 kb on - strand at 122.196 kb on - strand at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.354 kb on + strand, within MPMX19_06355 at 122.355 kb on - strand, within MPMX19_06355 at 122.355 kb on - strand, within MPMX19_06355 at 122.355 kb on - strand, within MPMX19_06355 at 122.355 kb on - strand, within MPMX19_06355 at 122.355 kb on - strand, within MPMX19_06355 at 122.519 kb on + strand, within MPMX19_06355 at 122.520 kb on - strand, within MPMX19_06355 at 122.581 kb on - strand, within MPMX19_06355 at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.711 kb on + strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.712 kb on - strand at 122.807 kb on + strand, within MPMX19_06356 at 122.808 kb on - strand, within MPMX19_06356 at 122.808 kb on - strand, within MPMX19_06356 at 122.808 kb on - strand, within MPMX19_06356 at 122.879 kb on + strand, within MPMX19_06356 at 122.879 kb on + strand, within MPMX19_06356 at 122.879 kb on + strand, within MPMX19_06356 at 122.880 kb on - strand, within MPMX19_06356 at 122.880 kb on - strand, within MPMX19_06356 at 122.880 kb on - strand, within MPMX19_06356 at 122.880 kb on - strand, within MPMX19_06356 at 123.104 kb on + strand, within MPMX19_06356 at 123.104 kb on + strand, within MPMX19_06356 at 123.104 kb on + strand, within MPMX19_06356 at 123.105 kb on - strand, within MPMX19_06356 at 123.105 kb on - strand, within MPMX19_06356 at 123.137 kb on + strand, within MPMX19_06356 at 123.137 kb on + strand, within MPMX19_06356 at 123.137 kb on + strand, within MPMX19_06356 at 123.137 kb on + strand, within MPMX19_06356 at 123.137 kb on + strand, within MPMX19_06356 at 123.138 kb on - strand, within MPMX19_06356 at 123.138 kb on - strand, within MPMX19_06356 at 123.138 kb on - strand, within MPMX19_06356 at 123.138 kb on - strand, within MPMX19_06356 at 123.138 kb on - strand, within MPMX19_06356 at 123.140 kb on + strand, within MPMX19_06356 at 123.140 kb on + strand, within MPMX19_06356 at 123.140 kb on + strand, within MPMX19_06356 at 123.141 kb on - strand, within MPMX19_06356 at 123.141 kb on - strand, within MPMX19_06356 at 123.318 kb on + strand, within MPMX19_06356 at 123.431 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.464 kb on + strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356 at 123.465 kb on - strand, within MPMX19_06356
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 121,564 + -0.5 121,564 + +0.9 121,643 - -0.6 121,741 + +1.9 121,742 - -1.4 121,820 + -0.6 121,820 + +0.1 121,820 + -0.1 121,820 + +0.1 121,821 - -0.4 121,821 - -0.2 121,821 - -0.1 121,821 - +0.4 121,821 - -0.5 121,841 + -0.3 121,841 + +0.4 121,841 + -0.5 121,842 - +0.1 121,923 + -0.3 121,923 + -0.3 121,923 + -0.1 122,195 + -0.0 122,195 + -1.6 122,196 - +0.2 122,196 - +0.0 122,196 - +1.0 122,196 - -1.0 122,354 + MPMX19_06355 0.20 +1.1 122,354 + MPMX19_06355 0.20 -0.5 122,354 + MPMX19_06355 0.20 -0.1 122,354 + MPMX19_06355 0.20 -0.0 122,354 + MPMX19_06355 0.20 +1.3 122,354 + MPMX19_06355 0.20 +0.2 122,354 + MPMX19_06355 0.20 +1.4 122,354 + MPMX19_06355 0.20 -0.4 122,354 + MPMX19_06355 0.20 -1.5 122,354 + MPMX19_06355 0.20 +0.8 122,355 - MPMX19_06355 0.21 -0.2 122,355 - MPMX19_06355 0.21 +0.2 122,355 - MPMX19_06355 0.21 +1.0 122,355 - MPMX19_06355 0.21 +0.0 122,355 - MPMX19_06355 0.21 -0.3 122,519 + MPMX19_06355 0.69 +1.2 122,520 - MPMX19_06355 0.69 -1.1 122,581 - MPMX19_06355 0.87 -0.1 122,711 + -0.9 122,711 + -1.1 122,711 + -0.0 122,711 + -0.1 122,711 + -0.8 122,711 + +0.8 122,711 + +0.5 122,711 + +0.1 122,711 + -0.5 122,711 + -0.5 122,711 + -0.5 122,711 + +0.3 122,712 - -1.5 122,712 - -0.2 122,712 - -0.6 122,712 - -1.1 122,712 - -1.1 122,712 - -0.4 122,712 - +0.2 122,712 - +1.2 122,712 - -0.3 122,712 - -0.7 122,712 - +0.5 122,712 - +1.0 122,807 + MPMX19_06356 0.16 -0.9 122,808 - MPMX19_06356 0.16 -0.4 122,808 - MPMX19_06356 0.16 -0.7 122,808 - MPMX19_06356 0.16 +0.2 122,879 + MPMX19_06356 0.22 +0.3 122,879 + MPMX19_06356 0.22 -0.7 122,879 + MPMX19_06356 0.22 +0.2 122,880 - MPMX19_06356 0.22 -0.3 122,880 - MPMX19_06356 0.22 -0.7 122,880 - MPMX19_06356 0.22 -0.2 122,880 - MPMX19_06356 0.22 -0.6 123,104 + MPMX19_06356 0.40 +0.3 123,104 + MPMX19_06356 0.40 -0.7 123,104 + MPMX19_06356 0.40 -0.2 123,105 - MPMX19_06356 0.40 -2.6 123,105 - MPMX19_06356 0.40 -1.4 123,137 + MPMX19_06356 0.43 -0.9 123,137 + MPMX19_06356 0.43 -0.9 123,137 + MPMX19_06356 0.43 +0.1 123,137 + MPMX19_06356 0.43 -0.3 123,137 + MPMX19_06356 0.43 +0.4 123,138 - MPMX19_06356 0.43 +1.1 123,138 - MPMX19_06356 0.43 -2.4 123,138 - MPMX19_06356 0.43 -0.1 123,138 - MPMX19_06356 0.43 -1.1 123,138 - MPMX19_06356 0.43 -2.4 123,140 + MPMX19_06356 0.43 +0.9 123,140 + MPMX19_06356 0.43 +0.7 123,140 + MPMX19_06356 0.43 -2.3 123,141 - MPMX19_06356 0.43 +0.7 123,141 - MPMX19_06356 0.43 -1.2 123,318 + MPMX19_06356 0.57 -1.1 123,431 + MPMX19_06356 0.66 +0.4 123,464 + MPMX19_06356 0.69 -1.1 123,464 + MPMX19_06356 0.69 -0.1 123,464 + MPMX19_06356 0.69 -0.1 123,464 + MPMX19_06356 0.69 +0.8 123,464 + MPMX19_06356 0.69 -1.6 123,464 + MPMX19_06356 0.69 -0.6 123,464 + MPMX19_06356 0.69 +0.2 123,464 + MPMX19_06356 0.69 +0.3 123,464 + MPMX19_06356 0.69 +0.5 123,464 + MPMX19_06356 0.69 +0.3 123,464 + MPMX19_06356 0.69 -0.7 123,464 + MPMX19_06356 0.69 -1.3 123,464 + MPMX19_06356 0.69 +0.3 123,465 - MPMX19_06356 0.69 -1.0 123,465 - MPMX19_06356 0.69 +1.0 123,465 - MPMX19_06356 0.69 +0.9 123,465 - MPMX19_06356 0.69 -1.4 123,465 - MPMX19_06356 0.69 -0.2 123,465 - MPMX19_06356 0.69 -0.2 123,465 - MPMX19_06356 0.69 -0.3 123,465 - MPMX19_06356 0.69 -0.5
Or see this region's nucleotide sequence