Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06242 and MPMX19_06243 are separated by 461 nucleotides MPMX19_06243 and MPMX19_06244 are separated by 106 nucleotides
MPMX19_06242: MPMX19_06242 - Fe(3+)-pyochelin receptor, at 431,589 to 433,814
_06242
MPMX19_06243: MPMX19_06243 - HTH-type transcriptional regulator PgrR, at 434,276 to 435,175
_06243
MPMX19_06244: MPMX19_06244 - 3-succinoylsemialdehyde-pyridine dehydrogenase, at 435,282 to 436,715
_06244
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.420 kb on + strand, within MPMX19_06242 at 433.420 kb on + strand, within MPMX19_06242 at 433.421 kb on - strand, within MPMX19_06242 at 433.874 kb on + strand at 433.875 kb on - strand at 434.146 kb on + strand at 434.147 kb on - strand at 434.162 kb on - strand at 434.162 kb on - strand at 434.240 kb on + strand at 434.241 kb on - strand at 434.352 kb on + strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.356 kb on - strand at 434.356 kb on - strand at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.452 kb on - strand, within MPMX19_06243 at 434.452 kb on - strand, within MPMX19_06243 at 434.569 kb on - strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.829 kb on + strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 435.217 kb on + strand at 435.217 kb on + strand at 435.217 kb on + strand at 435.217 kb on + strand at 435.218 kb on - strand at 435.218 kb on - strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.305 kb on + strand at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 433,327 + MPMX19_06242 0.78 +0.1 433,327 + MPMX19_06242 0.78 -1.1 433,327 + MPMX19_06242 0.78 -1.6 433,327 + MPMX19_06242 0.78 +0.6 433,327 + MPMX19_06242 0.78 +0.3 433,327 + MPMX19_06242 0.78 -0.4 433,327 + MPMX19_06242 0.78 +0.3 433,327 + MPMX19_06242 0.78 -1.3 433,327 + MPMX19_06242 0.78 +0.6 433,327 + MPMX19_06242 0.78 -0.1 433,328 - MPMX19_06242 0.78 +0.6 433,328 - MPMX19_06242 0.78 -1.0 433,328 - MPMX19_06242 0.78 -0.2 433,328 - MPMX19_06242 0.78 -0.4 433,328 - MPMX19_06242 0.78 -0.2 433,420 + MPMX19_06242 0.82 -1.4 433,420 + MPMX19_06242 0.82 +0.3 433,421 - MPMX19_06242 0.82 -0.1 433,874 + -0.2 433,875 - -1.1 434,146 + +0.1 434,147 - +1.4 434,162 - -1.0 434,162 - +1.0 434,240 + +0.3 434,241 - -0.4 434,352 + -1.4 434,353 - -0.9 434,353 - +0.1 434,353 - -0.3 434,353 - -1.0 434,353 - -1.7 434,353 - +1.2 434,353 - -0.4 434,355 + -1.0 434,355 + -0.1 434,355 + -0.2 434,355 + +0.3 434,356 - +0.7 434,356 - -1.1 434,451 + MPMX19_06243 0.19 +0.2 434,451 + MPMX19_06243 0.19 -1.4 434,451 + MPMX19_06243 0.19 -1.2 434,451 + MPMX19_06243 0.19 -2.0 434,452 - MPMX19_06243 0.20 -3.2 434,452 - MPMX19_06243 0.20 +0.7 434,569 - MPMX19_06243 0.33 -0.6 434,655 + MPMX19_06243 0.42 -1.0 434,655 + MPMX19_06243 0.42 +0.8 434,655 + MPMX19_06243 0.42 +0.6 434,655 + MPMX19_06243 0.42 -1.1 434,655 + MPMX19_06243 0.42 -0.2 434,655 + MPMX19_06243 0.42 -0.4 434,656 - MPMX19_06243 0.42 -0.4 434,656 - MPMX19_06243 0.42 -1.2 434,656 - MPMX19_06243 0.42 -1.0 434,829 + MPMX19_06243 0.61 +0.1 434,830 - MPMX19_06243 0.62 -1.2 434,830 - MPMX19_06243 0.62 -0.8 434,830 - MPMX19_06243 0.62 -1.0 434,830 - MPMX19_06243 0.62 -1.0 434,830 - MPMX19_06243 0.62 -0.3 434,830 - MPMX19_06243 0.62 +0.3 434,830 - MPMX19_06243 0.62 -2.6 435,217 + +0.2 435,217 + -0.5 435,217 + -1.4 435,217 + +0.4 435,218 - -0.7 435,218 - -0.1 435,303 + +0.3 435,303 + -1.4 435,303 + -0.2 435,303 + -1.4 435,303 + -0.0 435,303 + -1.6 435,303 + -0.1 435,303 + -0.7 435,303 + +1.4 435,303 + -0.6 435,303 + -0.2 435,303 + -1.5 435,303 + -0.9 435,303 + -0.9 435,303 + -1.2 435,303 + -1.2 435,303 + -2.1 435,303 + -0.2 435,304 - -1.4 435,304 - -0.2 435,304 - +0.7 435,304 - -1.1 435,304 - -0.6 435,304 - -1.4 435,304 - -0.9 435,304 - -0.9 435,304 - -0.5 435,304 - -0.6 435,304 - +0.4 435,304 - -0.8 435,304 - -0.9 435,304 - -0.6 435,304 - -0.7 435,304 - -1.7 435,304 - +0.0 435,304 - +1.1 435,304 - -0.1 435,305 + +0.2 435,555 + MPMX19_06244 0.19 -1.1 435,555 + MPMX19_06244 0.19 +2.4 435,555 + MPMX19_06244 0.19 -0.2 435,555 + MPMX19_06244 0.19 +0.4 435,556 - MPMX19_06244 0.19 +0.2 435,556 - MPMX19_06244 0.19 -0.5 435,556 - MPMX19_06244 0.19 -0.2 435,556 - MPMX19_06244 0.19 -0.8 435,639 + MPMX19_06244 0.25 -2.2 435,639 + MPMX19_06244 0.25 +0.6 435,639 + MPMX19_06244 0.25 -1.6 435,640 - MPMX19_06244 0.25 +0.1 435,640 - MPMX19_06244 0.25 -1.5 435,640 - MPMX19_06244 0.25 +0.2
Or see this region's nucleotide sequence