Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06160 and MPMX19_06161 are separated by 66 nucleotides MPMX19_06161 and MPMX19_06162 are separated by 97 nucleotides MPMX19_06162 and MPMX19_06163 overlap by 4 nucleotides
MPMX19_06160: MPMX19_06160 - Succinyl-diaminopimelate desuccinylase, at 345,255 to 346,508
_06160
MPMX19_06161: MPMX19_06161 - hypothetical protein, at 346,575 to 347,102
_06161
MPMX19_06162: MPMX19_06162 - hypothetical protein, at 347,200 to 348,996
_06162
MPMX19_06163: MPMX19_06163 - hypothetical protein, at 348,993 to 351,518
_06163
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2 at 346.320 kb on + strand, within MPMX19_06160 at 346.320 kb on + strand, within MPMX19_06160 at 346.320 kb on + strand, within MPMX19_06160 at 346.321 kb on - strand, within MPMX19_06160 at 346.321 kb on - strand, within MPMX19_06160 at 346.338 kb on + strand, within MPMX19_06160 at 346.339 kb on - strand, within MPMX19_06160 at 346.368 kb on + strand, within MPMX19_06160 at 346.369 kb on - strand, within MPMX19_06160 at 346.369 kb on - strand, within MPMX19_06160 at 346.369 kb on - strand, within MPMX19_06160 at 346.506 kb on + strand at 346.506 kb on + strand at 346.506 kb on + strand at 346.523 kb on + strand at 346.523 kb on + strand at 346.523 kb on + strand at 346.524 kb on - strand at 346.528 kb on + strand at 346.528 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 347.021 kb on - strand, within MPMX19_06161 at 347.056 kb on + strand at 347.056 kb on + strand at 347.057 kb on - strand at 347.057 kb on - strand at 347.057 kb on - strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.169 kb on - strand at 347.169 kb on - strand at 347.169 kb on - strand at 347.169 kb on - strand at 347.202 kb on - strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.384 kb on + strand, within MPMX19_06162 at 347.384 kb on + strand, within MPMX19_06162 at 347.385 kb on - strand, within MPMX19_06162 at 347.385 kb on - strand, within MPMX19_06162 at 347.385 kb on - strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.666 kb on + strand, within MPMX19_06162 at 347.666 kb on + strand, within MPMX19_06162 at 347.666 kb on + strand, within MPMX19_06162 at 347.666 kb on + strand, within MPMX19_06162 at 347.666 kb on + strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.667 kb on - strand, within MPMX19_06162 at 347.903 kb on + strand, within MPMX19_06162 at 347.903 kb on + strand, within MPMX19_06162 at 347.903 kb on + strand, within MPMX19_06162 at 347.903 kb on + strand, within MPMX19_06162 at 347.904 kb on - strand, within MPMX19_06162 at 347.904 kb on - strand, within MPMX19_06162 at 347.904 kb on - strand, within MPMX19_06162 at 347.904 kb on - strand, within MPMX19_06162 at 347.978 kb on + strand, within MPMX19_06162 at 347.978 kb on + strand, within MPMX19_06162 at 347.978 kb on + strand, within MPMX19_06162 at 347.979 kb on - strand, within MPMX19_06162 at 348.819 kb on - strand at 348.819 kb on - strand at 348.902 kb on + strand at 349.010 kb on - strand at 349.088 kb on + strand at 349.342 kb on + strand, within MPMX19_06163 at 349.342 kb on + strand, within MPMX19_06163 at 349.342 kb on + strand, within MPMX19_06163 at 349.343 kb on - strand, within MPMX19_06163 at 349.343 kb on - strand, within MPMX19_06163 at 349.415 kb on + strand, within MPMX19_06163 at 349.415 kb on + strand, within MPMX19_06163 at 349.415 kb on + strand, within MPMX19_06163 at 349.416 kb on - strand, within MPMX19_06163 at 349.416 kb on - strand, within MPMX19_06163 at 349.416 kb on - strand, within MPMX19_06163 at 349.416 kb on - strand, within MPMX19_06163 at 349.429 kb on + strand, within MPMX19_06163 at 349.430 kb on - strand, within MPMX19_06163 at 349.430 kb on - strand, within MPMX19_06163 at 349.435 kb on + strand, within MPMX19_06163 at 349.435 kb on + strand, within MPMX19_06163 at 349.435 kb on + strand, within MPMX19_06163 at 349.435 kb on + strand, within MPMX19_06163 at 349.435 kb on + strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.436 kb on - strand, within MPMX19_06163 at 349.502 kb on + strand, within MPMX19_06163 at 349.502 kb on + strand, within MPMX19_06163 at 349.502 kb on + strand, within MPMX19_06163 at 349.502 kb on + strand, within MPMX19_06163 at 349.503 kb on - strand, within MPMX19_06163 at 349.503 kb on - strand, within MPMX19_06163 at 349.503 kb on - strand, within MPMX19_06163 at 349.676 kb on - strand, within MPMX19_06163 at 349.676 kb on - strand, within MPMX19_06163 at 349.676 kb on - strand, within MPMX19_06163 at 349.876 kb on + strand, within MPMX19_06163 at 349.877 kb on - strand, within MPMX19_06163 at 349.877 kb on - strand, within MPMX19_06163 at 349.903 kb on + strand, within MPMX19_06163 at 349.903 kb on + strand, within MPMX19_06163 at 349.903 kb on + strand, within MPMX19_06163 at 349.903 kb on + strand, within MPMX19_06163 at 349.904 kb on - strand, within MPMX19_06163 at 349.904 kb on - strand, within MPMX19_06163 at 349.904 kb on - strand, within MPMX19_06163 at 349.904 kb on - strand, within MPMX19_06163 at 349.918 kb on + strand, within MPMX19_06163 at 349.918 kb on + strand, within MPMX19_06163 at 349.918 kb on + strand, within MPMX19_06163 at 349.918 kb on + strand, within MPMX19_06163 at 349.919 kb on - strand, within MPMX19_06163
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 346,320 + MPMX19_06160 0.85 -0.3 346,320 + MPMX19_06160 0.85 -1.2 346,320 + MPMX19_06160 0.85 -0.4 346,321 - MPMX19_06160 0.85 +0.1 346,321 - MPMX19_06160 0.85 -0.8 346,338 + MPMX19_06160 0.86 +1.3 346,339 - MPMX19_06160 0.86 -0.2 346,368 + MPMX19_06160 0.89 -0.7 346,369 - MPMX19_06160 0.89 -0.0 346,369 - MPMX19_06160 0.89 -1.4 346,369 - MPMX19_06160 0.89 +2.3 346,506 + -0.6 346,506 + +0.2 346,506 + -0.0 346,523 + -0.1 346,523 + +0.4 346,523 + +1.1 346,524 - -0.2 346,528 + +0.2 346,528 + -1.3 346,541 + -0.3 346,541 + -2.0 346,541 + -1.5 346,541 + +0.4 346,541 + -0.3 346,541 + +0.4 346,541 + +0.3 346,541 + -0.3 346,541 + -0.2 346,541 + -0.0 346,541 + +1.1 346,542 - -1.0 346,542 - +0.3 346,542 - -1.7 346,542 - -1.7 346,542 - +0.1 346,542 - +0.7 346,542 - -0.1 346,542 - -0.6 346,542 - +0.4 346,597 + +0.3 346,597 + +0.9 346,597 + -1.0 346,597 + -0.1 346,597 + -1.2 346,597 + +1.0 346,597 + -0.3 346,597 + -0.4 346,597 + +0.1 346,597 + -0.9 346,597 + +0.7 346,597 + +0.6 346,597 + +0.5 346,597 + -1.7 346,597 + +0.1 346,598 - -0.1 346,598 - +0.3 346,598 - -0.2 346,598 - +0.5 346,598 - -0.9 346,598 - -0.7 346,654 + MPMX19_06161 0.15 -0.1 346,654 + MPMX19_06161 0.15 -0.5 346,654 + MPMX19_06161 0.15 +0.6 346,654 + MPMX19_06161 0.15 -0.2 346,654 + MPMX19_06161 0.15 -0.3 346,654 + MPMX19_06161 0.15 +0.0 346,654 + MPMX19_06161 0.15 -0.7 346,654 + MPMX19_06161 0.15 -0.9 346,654 + MPMX19_06161 0.15 -1.6 346,654 + MPMX19_06161 0.15 +0.4 346,654 + MPMX19_06161 0.15 +1.2 346,654 + MPMX19_06161 0.15 -0.0 346,654 + MPMX19_06161 0.15 -0.4 346,654 + MPMX19_06161 0.15 -1.2 346,655 - MPMX19_06161 0.15 +2.3 346,655 - MPMX19_06161 0.15 +1.6 346,655 - MPMX19_06161 0.15 -0.6 346,655 - MPMX19_06161 0.15 -0.5 346,655 - MPMX19_06161 0.15 -1.5 346,655 - MPMX19_06161 0.15 -0.9 346,655 - MPMX19_06161 0.15 +0.8 346,655 - MPMX19_06161 0.15 -0.1 346,655 - MPMX19_06161 0.15 -0.7 346,655 - MPMX19_06161 0.15 +1.7 346,655 - MPMX19_06161 0.15 -0.6 346,655 - MPMX19_06161 0.15 -1.1 347,021 - MPMX19_06161 0.84 +0.6 347,056 + -0.1 347,056 + -0.5 347,057 - +1.6 347,057 - -0.6 347,057 - +0.6 347,168 + -0.7 347,168 + -1.3 347,168 + -1.1 347,168 + -0.1 347,168 + +0.9 347,169 - -0.6 347,169 - -1.6 347,169 - +0.8 347,169 - -0.2 347,202 - -1.6 347,239 + -0.6 347,239 + -0.9 347,239 + -0.5 347,239 + +0.1 347,239 + -0.2 347,239 + +0.1 347,239 + -0.9 347,239 + +0.6 347,239 + +1.0 347,239 + -0.3 347,239 + -0.2 347,240 - +0.6 347,240 - -0.0 347,240 - -2.2 347,240 - -0.5 347,240 - +1.3 347,240 - -0.0 347,384 + MPMX19_06162 0.10 -1.0 347,384 + MPMX19_06162 0.10 -1.0 347,385 - MPMX19_06162 0.10 -0.1 347,385 - MPMX19_06162 0.10 -0.4 347,385 - MPMX19_06162 0.10 -0.6 347,444 + MPMX19_06162 0.14 -0.3 347,444 + MPMX19_06162 0.14 -0.0 347,444 + MPMX19_06162 0.14 -0.6 347,444 + MPMX19_06162 0.14 -0.1 347,444 + MPMX19_06162 0.14 +0.1 347,444 + MPMX19_06162 0.14 -0.1 347,444 + MPMX19_06162 0.14 -1.6 347,444 + MPMX19_06162 0.14 -0.9 347,445 - MPMX19_06162 0.14 -0.1 347,445 - MPMX19_06162 0.14 +0.1 347,445 - MPMX19_06162 0.14 -0.6 347,445 - MPMX19_06162 0.14 +0.6 347,445 - MPMX19_06162 0.14 -0.7 347,445 - MPMX19_06162 0.14 -1.1 347,445 - MPMX19_06162 0.14 +0.9 347,477 + MPMX19_06162 0.15 +0.8 347,477 + MPMX19_06162 0.15 -0.2 347,477 + MPMX19_06162 0.15 -0.7 347,477 + MPMX19_06162 0.15 -0.2 347,477 + MPMX19_06162 0.15 -1.7 347,477 + MPMX19_06162 0.15 -1.2 347,478 - MPMX19_06162 0.15 -0.5 347,478 - MPMX19_06162 0.15 -0.3 347,478 - MPMX19_06162 0.15 -0.7 347,478 - MPMX19_06162 0.15 +0.4 347,478 - MPMX19_06162 0.15 -1.1 347,478 - MPMX19_06162 0.15 -0.7 347,666 + MPMX19_06162 0.26 -1.4 347,666 + MPMX19_06162 0.26 +0.2 347,666 + MPMX19_06162 0.26 -1.1 347,666 + MPMX19_06162 0.26 -0.2 347,666 + MPMX19_06162 0.26 +0.8 347,667 - MPMX19_06162 0.26 -1.0 347,667 - MPMX19_06162 0.26 -0.5 347,667 - MPMX19_06162 0.26 -0.7 347,667 - MPMX19_06162 0.26 +0.6 347,667 - MPMX19_06162 0.26 -1.4 347,667 - MPMX19_06162 0.26 -0.3 347,667 - MPMX19_06162 0.26 -1.1 347,667 - MPMX19_06162 0.26 +0.8 347,903 + MPMX19_06162 0.39 -2.4 347,903 + MPMX19_06162 0.39 -0.5 347,903 + MPMX19_06162 0.39 -1.2 347,903 + MPMX19_06162 0.39 +0.9 347,904 - MPMX19_06162 0.39 +0.2 347,904 - MPMX19_06162 0.39 -0.1 347,904 - MPMX19_06162 0.39 +0.1 347,904 - MPMX19_06162 0.39 -0.7 347,978 + MPMX19_06162 0.43 -0.0 347,978 + MPMX19_06162 0.43 +0.6 347,978 + MPMX19_06162 0.43 -1.3 347,979 - MPMX19_06162 0.43 -0.8 348,819 - -0.0 348,819 - -1.1 348,902 + -0.4 349,010 - -1.4 349,088 + -0.3 349,342 + MPMX19_06163 0.14 -0.2 349,342 + MPMX19_06163 0.14 -0.6 349,342 + MPMX19_06163 0.14 +2.0 349,343 - MPMX19_06163 0.14 +0.3 349,343 - MPMX19_06163 0.14 -0.3 349,415 + MPMX19_06163 0.17 -0.4 349,415 + MPMX19_06163 0.17 +0.2 349,415 + MPMX19_06163 0.17 -0.3 349,416 - MPMX19_06163 0.17 -1.3 349,416 - MPMX19_06163 0.17 -0.3 349,416 - MPMX19_06163 0.17 -0.6 349,416 - MPMX19_06163 0.17 -1.1 349,429 + MPMX19_06163 0.17 -0.2 349,430 - MPMX19_06163 0.17 -0.6 349,430 - MPMX19_06163 0.17 +0.3 349,435 + MPMX19_06163 0.17 -1.6 349,435 + MPMX19_06163 0.17 -0.6 349,435 + MPMX19_06163 0.17 +1.0 349,435 + MPMX19_06163 0.17 -0.6 349,435 + MPMX19_06163 0.17 -0.9 349,436 - MPMX19_06163 0.18 +0.5 349,436 - MPMX19_06163 0.18 -1.0 349,436 - MPMX19_06163 0.18 -0.1 349,436 - MPMX19_06163 0.18 -2.1 349,436 - MPMX19_06163 0.18 -0.4 349,436 - MPMX19_06163 0.18 -1.2 349,436 - MPMX19_06163 0.18 -2.4 349,436 - MPMX19_06163 0.18 -0.9 349,436 - MPMX19_06163 0.18 +1.2 349,436 - MPMX19_06163 0.18 -0.9 349,436 - MPMX19_06163 0.18 -0.5 349,436 - MPMX19_06163 0.18 -0.0 349,502 + MPMX19_06163 0.20 +1.6 349,502 + MPMX19_06163 0.20 +0.7 349,502 + MPMX19_06163 0.20 -0.0 349,502 + MPMX19_06163 0.20 -0.2 349,503 - MPMX19_06163 0.20 -1.7 349,503 - MPMX19_06163 0.20 +0.1 349,503 - MPMX19_06163 0.20 -0.4 349,676 - MPMX19_06163 0.27 +0.2 349,676 - MPMX19_06163 0.27 +0.1 349,676 - MPMX19_06163 0.27 -0.9 349,876 + MPMX19_06163 0.35 -1.0 349,877 - MPMX19_06163 0.35 +0.1 349,877 - MPMX19_06163 0.35 -0.1 349,903 + MPMX19_06163 0.36 -1.5 349,903 + MPMX19_06163 0.36 -1.2 349,903 + MPMX19_06163 0.36 +0.3 349,903 + MPMX19_06163 0.36 +0.8 349,904 - MPMX19_06163 0.36 -1.6 349,904 - MPMX19_06163 0.36 -0.0 349,904 - MPMX19_06163 0.36 +0.2 349,904 - MPMX19_06163 0.36 +1.3 349,918 + MPMX19_06163 0.37 -0.8 349,918 + MPMX19_06163 0.37 +0.8 349,918 + MPMX19_06163 0.37 +1.1 349,918 + MPMX19_06163 0.37 -0.2 349,919 - MPMX19_06163 0.37 -0.0
Or see this region's nucleotide sequence