Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05253 and MPMX19_05254 are separated by 79 nucleotides MPMX19_05254 and MPMX19_05255 are separated by 346 nucleotides
MPMX19_05253: MPMX19_05253 - Carbon monoxide dehydrogenase large chain, at 782,926 to 785,316
_05253
MPMX19_05254: MPMX19_05254 - Carbon monoxide dehydrogenase small chain, at 785,396 to 785,896
_05254
MPMX19_05255: MPMX19_05255 - hypothetical protein, at 786,243 to 787,217
_05255
Position (kb) 785
786 Strain fitness (log2 ratio) -2
-1
0
1
2 at 784.526 kb on + strand, within MPMX19_05253 at 784.526 kb on + strand, within MPMX19_05253 at 784.527 kb on - strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.664 kb on + strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.665 kb on - strand, within MPMX19_05253 at 784.685 kb on + strand, within MPMX19_05253 at 784.685 kb on + strand, within MPMX19_05253 at 784.685 kb on + strand, within MPMX19_05253 at 784.686 kb on - strand, within MPMX19_05253 at 784.686 kb on - strand, within MPMX19_05253 at 784.686 kb on - strand, within MPMX19_05253 at 784.817 kb on + strand, within MPMX19_05253 at 784.817 kb on + strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.818 kb on - strand, within MPMX19_05253 at 784.907 kb on + strand, within MPMX19_05253 at 784.907 kb on + strand, within MPMX19_05253 at 784.907 kb on + strand, within MPMX19_05253 at 784.908 kb on - strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.988 kb on + strand, within MPMX19_05253 at 784.989 kb on - strand, within MPMX19_05253 at 784.989 kb on - strand, within MPMX19_05253 at 784.989 kb on - strand, within MPMX19_05253 at 785.016 kb on - strand, within MPMX19_05253 at 785.183 kb on + strand at 785.183 kb on + strand at 785.183 kb on + strand at 785.184 kb on - strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.240 kb on + strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.241 kb on - strand at 785.397 kb on + strand at 785.397 kb on + strand at 785.536 kb on + strand, within MPMX19_05254 at 785.536 kb on + strand, within MPMX19_05254 at 785.536 kb on + strand, within MPMX19_05254 at 785.537 kb on - strand, within MPMX19_05254 at 785.537 kb on - strand, within MPMX19_05254 at 785.936 kb on + strand at 785.937 kb on - strand at 785.937 kb on - strand at 785.937 kb on - strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.956 kb on + strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 785.957 kb on - strand at 786.034 kb on - strand at 786.107 kb on + strand at 786.108 kb on - strand at 786.149 kb on + strand at 786.150 kb on - strand at 786.185 kb on - strand at 786.190 kb on + strand at 786.190 kb on + strand at 786.190 kb on + strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.191 kb on - strand at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.381 kb on + strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.382 kb on - strand, within MPMX19_05255 at 786.384 kb on + strand, within MPMX19_05255 at 786.384 kb on + strand, within MPMX19_05255 at 786.385 kb on - strand, within MPMX19_05255 at 786.385 kb on - strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.414 kb on + strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.415 kb on - strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.609 kb on + strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.610 kb on - strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.618 kb on + strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.619 kb on - strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.756 kb on + strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.757 kb on - strand, within MPMX19_05255 at 786.781 kb on - strand, within MPMX19_05255
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 784,526 + MPMX19_05253 0.67 -0.5 784,526 + MPMX19_05253 0.67 -1.1 784,527 - MPMX19_05253 0.67 -0.3 784,664 + MPMX19_05253 0.73 -1.5 784,664 + MPMX19_05253 0.73 -0.7 784,664 + MPMX19_05253 0.73 -0.1 784,664 + MPMX19_05253 0.73 -0.2 784,664 + MPMX19_05253 0.73 +0.3 784,665 - MPMX19_05253 0.73 +1.2 784,665 - MPMX19_05253 0.73 -1.1 784,665 - MPMX19_05253 0.73 -0.3 784,665 - MPMX19_05253 0.73 +0.7 784,665 - MPMX19_05253 0.73 -0.1 784,665 - MPMX19_05253 0.73 +1.0 784,665 - MPMX19_05253 0.73 -1.5 784,685 + MPMX19_05253 0.74 +0.2 784,685 + MPMX19_05253 0.74 -0.4 784,685 + MPMX19_05253 0.74 -1.3 784,686 - MPMX19_05253 0.74 +0.5 784,686 - MPMX19_05253 0.74 -1.0 784,686 - MPMX19_05253 0.74 -0.5 784,817 + MPMX19_05253 0.79 +1.0 784,817 + MPMX19_05253 0.79 -1.5 784,818 - MPMX19_05253 0.79 +0.0 784,818 - MPMX19_05253 0.79 -0.5 784,818 - MPMX19_05253 0.79 -0.1 784,818 - MPMX19_05253 0.79 +0.1 784,818 - MPMX19_05253 0.79 -0.3 784,907 + MPMX19_05253 0.83 -1.5 784,907 + MPMX19_05253 0.83 +0.5 784,907 + MPMX19_05253 0.83 -0.1 784,908 - MPMX19_05253 0.83 -1.2 784,988 + MPMX19_05253 0.86 +0.3 784,988 + MPMX19_05253 0.86 -1.0 784,988 + MPMX19_05253 0.86 -0.5 784,988 + MPMX19_05253 0.86 +1.3 784,988 + MPMX19_05253 0.86 -0.3 784,988 + MPMX19_05253 0.86 +0.2 784,988 + MPMX19_05253 0.86 -0.1 784,988 + MPMX19_05253 0.86 -1.4 784,989 - MPMX19_05253 0.86 -0.4 784,989 - MPMX19_05253 0.86 +0.4 784,989 - MPMX19_05253 0.86 -0.7 785,016 - MPMX19_05253 0.87 -0.7 785,183 + -1.5 785,183 + -0.8 785,183 + +1.3 785,184 - -0.4 785,240 + +0.2 785,240 + -0.7 785,240 + +1.5 785,240 + +0.5 785,240 + +0.2 785,241 - +0.7 785,241 - +0.1 785,241 - -1.8 785,241 - +0.5 785,241 - +0.9 785,241 - +0.5 785,241 - -2.0 785,241 - -0.3 785,241 - +0.6 785,241 - +0.5 785,397 + -1.7 785,397 + -1.1 785,536 + MPMX19_05254 0.28 +0.2 785,536 + MPMX19_05254 0.28 +0.7 785,536 + MPMX19_05254 0.28 -0.6 785,537 - MPMX19_05254 0.28 +0.9 785,537 - MPMX19_05254 0.28 -0.8 785,936 + -0.6 785,937 - +0.6 785,937 - -0.8 785,937 - +0.1 785,956 + -0.1 785,956 + +0.1 785,956 + -0.8 785,956 + -0.1 785,956 + -0.5 785,956 + -0.6 785,956 + +0.0 785,956 + +0.2 785,956 + -1.0 785,956 + +0.8 785,956 + -1.6 785,956 + +0.1 785,956 + -0.9 785,957 - +0.5 785,957 - -0.0 785,957 - -1.1 785,957 - -0.1 785,957 - +0.9 785,957 - -0.8 785,957 - -0.1 785,957 - -0.5 785,957 - -0.5 785,957 - -1.3 785,957 - +0.9 785,957 - +0.6 786,034 - -0.2 786,107 + -1.1 786,108 - -0.5 786,149 + -2.0 786,150 - -0.1 786,185 - -0.2 786,190 + -0.1 786,190 + -0.1 786,190 + -0.3 786,191 - -0.3 786,191 - -1.0 786,191 - +0.2 786,191 - -1.5 786,191 - -1.8 786,381 + MPMX19_05255 0.14 -1.1 786,381 + MPMX19_05255 0.14 +0.1 786,381 + MPMX19_05255 0.14 +0.7 786,381 + MPMX19_05255 0.14 -0.3 786,381 + MPMX19_05255 0.14 +2.5 786,381 + MPMX19_05255 0.14 +0.2 786,381 + MPMX19_05255 0.14 +0.1 786,381 + MPMX19_05255 0.14 -0.4 786,381 + MPMX19_05255 0.14 +1.1 786,382 - MPMX19_05255 0.14 +0.3 786,382 - MPMX19_05255 0.14 -1.1 786,382 - MPMX19_05255 0.14 +0.1 786,382 - MPMX19_05255 0.14 -0.3 786,382 - MPMX19_05255 0.14 -0.3 786,382 - MPMX19_05255 0.14 +0.3 786,382 - MPMX19_05255 0.14 -1.7 786,384 + MPMX19_05255 0.14 +0.3 786,384 + MPMX19_05255 0.14 -1.1 786,385 - MPMX19_05255 0.15 -0.5 786,385 - MPMX19_05255 0.15 -1.2 786,414 + MPMX19_05255 0.18 -0.1 786,414 + MPMX19_05255 0.18 -1.2 786,414 + MPMX19_05255 0.18 -1.7 786,414 + MPMX19_05255 0.18 -0.2 786,415 - MPMX19_05255 0.18 -0.0 786,415 - MPMX19_05255 0.18 +0.1 786,415 - MPMX19_05255 0.18 +0.7 786,415 - MPMX19_05255 0.18 -0.4 786,415 - MPMX19_05255 0.18 -0.2 786,609 + MPMX19_05255 0.38 -1.1 786,609 + MPMX19_05255 0.38 +0.3 786,609 + MPMX19_05255 0.38 +0.2 786,609 + MPMX19_05255 0.38 +0.5 786,609 + MPMX19_05255 0.38 -0.0 786,609 + MPMX19_05255 0.38 -0.8 786,609 + MPMX19_05255 0.38 +0.5 786,609 + MPMX19_05255 0.38 +0.6 786,609 + MPMX19_05255 0.38 +0.2 786,610 - MPMX19_05255 0.38 +1.5 786,610 - MPMX19_05255 0.38 +0.2 786,610 - MPMX19_05255 0.38 +1.5 786,610 - MPMX19_05255 0.38 +0.3 786,610 - MPMX19_05255 0.38 +1.5 786,610 - MPMX19_05255 0.38 +0.7 786,610 - MPMX19_05255 0.38 -1.2 786,610 - MPMX19_05255 0.38 -0.8 786,610 - MPMX19_05255 0.38 +0.6 786,618 + MPMX19_05255 0.38 -0.6 786,618 + MPMX19_05255 0.38 +0.7 786,618 + MPMX19_05255 0.38 -2.0 786,618 + MPMX19_05255 0.38 -0.9 786,618 + MPMX19_05255 0.38 -0.8 786,618 + MPMX19_05255 0.38 +1.5 786,618 + MPMX19_05255 0.38 +0.2 786,618 + MPMX19_05255 0.38 +0.1 786,618 + MPMX19_05255 0.38 +0.7 786,618 + MPMX19_05255 0.38 +0.7 786,618 + MPMX19_05255 0.38 -1.0 786,618 + MPMX19_05255 0.38 +1.1 786,618 + MPMX19_05255 0.38 -0.1 786,618 + MPMX19_05255 0.38 -0.7 786,618 + MPMX19_05255 0.38 -0.7 786,618 + MPMX19_05255 0.38 -0.1 786,618 + MPMX19_05255 0.38 +0.2 786,619 - MPMX19_05255 0.39 -0.5 786,619 - MPMX19_05255 0.39 -0.3 786,619 - MPMX19_05255 0.39 -0.5 786,619 - MPMX19_05255 0.39 -1.0 786,619 - MPMX19_05255 0.39 -0.0 786,619 - MPMX19_05255 0.39 -0.6 786,619 - MPMX19_05255 0.39 +0.3 786,619 - MPMX19_05255 0.39 -1.1 786,619 - MPMX19_05255 0.39 +0.5 786,619 - MPMX19_05255 0.39 +0.7 786,619 - MPMX19_05255 0.39 -1.8 786,619 - MPMX19_05255 0.39 -0.0 786,756 + MPMX19_05255 0.53 -0.5 786,756 + MPMX19_05255 0.53 -0.1 786,756 + MPMX19_05255 0.53 -0.1 786,756 + MPMX19_05255 0.53 +1.7 786,756 + MPMX19_05255 0.53 +1.5 786,756 + MPMX19_05255 0.53 -0.5 786,756 + MPMX19_05255 0.53 -0.4 786,756 + MPMX19_05255 0.53 +1.1 786,756 + MPMX19_05255 0.53 +0.1 786,757 - MPMX19_05255 0.53 -2.1 786,757 - MPMX19_05255 0.53 -1.5 786,757 - MPMX19_05255 0.53 +0.7 786,757 - MPMX19_05255 0.53 -0.4 786,757 - MPMX19_05255 0.53 -0.1 786,757 - MPMX19_05255 0.53 -0.5 786,757 - MPMX19_05255 0.53 -2.2 786,781 - MPMX19_05255 0.55 -1.3
Or see this region's nucleotide sequence