Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05093 and MPMX19_05094 are separated by 205 nucleotides MPMX19_05094 and MPMX19_05095 overlap by 20 nucleotides MPMX19_05095 and MPMX19_05096 are separated by 55 nucleotides MPMX19_05096 and MPMX19_05097 overlap by 1 nucleotides MPMX19_05097 and MPMX19_05098 are separated by 4 nucleotides
MPMX19_05093: MPMX19_05093 - Biotin transport ATP-binding protein BioM, at 582,266 to 582,940
_05093
MPMX19_05094: MPMX19_05094 - Antitoxin YefM, at 583,146 to 583,412
_05094
MPMX19_05095: MPMX19_05095 - Toxin YoeB, at 583,393 to 583,659
_05095
MPMX19_05096: MPMX19_05096 - L-cystine import ATP-binding protein TcyC, at 583,715 to 584,542
_05096
MPMX19_05097: MPMX19_05097 - L-cystine transport system permease protein YecS, at 584,542 to 585,246
_05097
MPMX19_05098: MPMX19_05098 - Arginine transport system permease protein ArtQ, at 585,251 to 585,898
_05098
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 583.023 kb on + strand at 583.053 kb on + strand at 583.053 kb on + strand at 583.053 kb on + strand at 583.054 kb on - strand at 583.070 kb on - strand at 583.070 kb on - strand at 583.073 kb on + strand at 583.073 kb on + strand at 583.074 kb on - strand at 583.098 kb on + strand at 583.099 kb on - strand at 583.099 kb on - strand at 583.173 kb on - strand, within MPMX19_05094 at 583.173 kb on - strand, within MPMX19_05094 at 583.173 kb on - strand, within MPMX19_05094 at 583.429 kb on + strand, within MPMX19_05095 at 583.430 kb on - strand, within MPMX19_05095 at 583.430 kb on - strand, within MPMX19_05095 at 583.433 kb on + strand, within MPMX19_05095 at 583.433 kb on + strand, within MPMX19_05095 at 583.434 kb on - strand, within MPMX19_05095 at 583.434 kb on - strand, within MPMX19_05095 at 583.500 kb on + strand, within MPMX19_05095 at 583.501 kb on - strand, within MPMX19_05095 at 583.501 kb on - strand, within MPMX19_05095 at 583.594 kb on + strand, within MPMX19_05095 at 583.595 kb on - strand, within MPMX19_05095 at 583.634 kb on + strand at 583.634 kb on + strand at 583.634 kb on + strand at 583.648 kb on + strand at 583.654 kb on + strand at 583.655 kb on - strand at 583.655 kb on - strand at 583.655 kb on - strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.737 kb on + strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 583.738 kb on - strand at 584.055 kb on + strand, within MPMX19_05096 at 584.055 kb on + strand, within MPMX19_05096 at 584.056 kb on - strand, within MPMX19_05096 at 584.056 kb on - strand, within MPMX19_05096 at 584.278 kb on + strand, within MPMX19_05096 at 584.278 kb on + strand, within MPMX19_05096 at 584.278 kb on + strand, within MPMX19_05096 at 584.278 kb on + strand, within MPMX19_05096 at 584.279 kb on - strand, within MPMX19_05096 at 584.279 kb on - strand, within MPMX19_05096 at 584.279 kb on - strand, within MPMX19_05096 at 584.281 kb on - strand, within MPMX19_05096 at 584.281 kb on - strand, within MPMX19_05096 at 584.281 kb on - strand, within MPMX19_05096 at 584.322 kb on + strand, within MPMX19_05096 at 584.322 kb on + strand, within MPMX19_05096 at 584.323 kb on - strand, within MPMX19_05096 at 584.663 kb on + strand, within MPMX19_05097 at 584.663 kb on + strand, within MPMX19_05097 at 584.663 kb on + strand, within MPMX19_05097 at 584.664 kb on - strand, within MPMX19_05097 at 584.664 kb on - strand, within MPMX19_05097 at 584.732 kb on + strand, within MPMX19_05097 at 584.732 kb on + strand, within MPMX19_05097 at 584.732 kb on + strand, within MPMX19_05097 at 584.732 kb on + strand, within MPMX19_05097 at 584.732 kb on + strand, within MPMX19_05097 at 584.732 kb on + strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.733 kb on - strand, within MPMX19_05097 at 584.864 kb on + strand, within MPMX19_05097 at 584.864 kb on + strand, within MPMX19_05097 at 584.864 kb on + strand, within MPMX19_05097 at 584.864 kb on + strand, within MPMX19_05097 at 584.864 kb on + strand, within MPMX19_05097 at 584.864 kb on + strand, within MPMX19_05097 at 584.864 kb on + strand, within MPMX19_05097 at 584.865 kb on - strand, within MPMX19_05097 at 584.865 kb on - strand, within MPMX19_05097 at 584.865 kb on - strand, within MPMX19_05097 at 584.865 kb on - strand, within MPMX19_05097 at 584.865 kb on - strand, within MPMX19_05097 at 584.945 kb on + strand, within MPMX19_05097 at 584.945 kb on + strand, within MPMX19_05097 at 584.946 kb on - strand, within MPMX19_05097 at 584.946 kb on - strand, within MPMX19_05097 at 584.957 kb on + strand, within MPMX19_05097 at 584.957 kb on + strand, within MPMX19_05097 at 584.957 kb on + strand, within MPMX19_05097 at 584.957 kb on + strand, within MPMX19_05097 at 584.957 kb on + strand, within MPMX19_05097 at 584.957 kb on + strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 584.958 kb on - strand, within MPMX19_05097 at 585.026 kb on + strand, within MPMX19_05097 at 585.026 kb on + strand, within MPMX19_05097 at 585.027 kb on - strand, within MPMX19_05097 at 585.027 kb on - strand, within MPMX19_05097 at 585.077 kb on + strand, within MPMX19_05097 at 585.077 kb on + strand, within MPMX19_05097 at 585.078 kb on - strand, within MPMX19_05097 at 585.078 kb on - strand, within MPMX19_05097 at 585.078 kb on - strand, within MPMX19_05097 at 585.219 kb on - strand at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.318 kb on + strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.319 kb on - strand, within MPMX19_05098 at 585.339 kb on + strand, within MPMX19_05098 at 585.339 kb on + strand, within MPMX19_05098 at 585.339 kb on + strand, within MPMX19_05098 at 585.339 kb on + strand, within MPMX19_05098 at 585.339 kb on + strand, within MPMX19_05098 at 585.339 kb on + strand, within MPMX19_05098 at 585.339 kb on + strand, within MPMX19_05098 at 585.340 kb on - strand, within MPMX19_05098 at 585.340 kb on - strand, within MPMX19_05098 at 585.357 kb on + strand, within MPMX19_05098 at 585.357 kb on + strand, within MPMX19_05098 at 585.357 kb on + strand, within MPMX19_05098 at 585.357 kb on + strand, within MPMX19_05098 at 585.357 kb on + strand, within MPMX19_05098 at 585.357 kb on + strand, within MPMX19_05098 at 585.358 kb on - strand, within MPMX19_05098 at 585.358 kb on - strand, within MPMX19_05098 at 585.358 kb on - strand, within MPMX19_05098 at 585.358 kb on - strand, within MPMX19_05098 at 585.358 kb on - strand, within MPMX19_05098
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 583,023 + +0.5 583,053 + -0.1 583,053 + +0.2 583,053 + -0.8 583,054 - -0.8 583,070 - -0.7 583,070 - +0.7 583,073 + -0.5 583,073 + -0.2 583,074 - -1.3 583,098 + -1.1 583,099 - -0.2 583,099 - -1.9 583,173 - MPMX19_05094 0.10 -1.8 583,173 - MPMX19_05094 0.10 +0.2 583,173 - MPMX19_05094 0.10 -0.6 583,429 + MPMX19_05095 0.13 +0.9 583,430 - MPMX19_05095 0.14 -0.8 583,430 - MPMX19_05095 0.14 +0.3 583,433 + MPMX19_05095 0.15 +0.0 583,433 + MPMX19_05095 0.15 -1.1 583,434 - MPMX19_05095 0.15 -1.0 583,434 - MPMX19_05095 0.15 -0.8 583,500 + MPMX19_05095 0.40 +0.1 583,501 - MPMX19_05095 0.40 -1.5 583,501 - MPMX19_05095 0.40 -0.5 583,594 + MPMX19_05095 0.75 -0.7 583,595 - MPMX19_05095 0.76 -0.2 583,634 + +1.1 583,634 + -0.9 583,634 + +0.7 583,648 + -1.2 583,654 + -1.7 583,655 - +0.2 583,655 - -0.6 583,655 - -1.1 583,737 + -0.5 583,737 + +0.1 583,737 + -1.1 583,737 + -0.4 583,737 + -0.5 583,737 + +0.1 583,737 + -0.2 583,738 - -2.7 583,738 - +0.1 583,738 - -0.2 583,738 - +1.5 583,738 - -0.1 583,738 - -0.9 583,738 - -1.3 583,738 - -0.8 584,055 + MPMX19_05096 0.41 +0.3 584,055 + MPMX19_05096 0.41 +1.0 584,056 - MPMX19_05096 0.41 -3.0 584,056 - MPMX19_05096 0.41 +0.1 584,278 + MPMX19_05096 0.68 +0.7 584,278 + MPMX19_05096 0.68 -0.2 584,278 + MPMX19_05096 0.68 +0.7 584,278 + MPMX19_05096 0.68 +0.8 584,279 - MPMX19_05096 0.68 -1.3 584,279 - MPMX19_05096 0.68 -2.1 584,279 - MPMX19_05096 0.68 +0.4 584,281 - MPMX19_05096 0.68 -0.5 584,281 - MPMX19_05096 0.68 -0.5 584,281 - MPMX19_05096 0.68 -0.1 584,322 + MPMX19_05096 0.73 +1.1 584,322 + MPMX19_05096 0.73 +0.3 584,323 - MPMX19_05096 0.73 +1.2 584,663 + MPMX19_05097 0.17 -2.3 584,663 + MPMX19_05097 0.17 +1.2 584,663 + MPMX19_05097 0.17 -0.2 584,664 - MPMX19_05097 0.17 -1.4 584,664 - MPMX19_05097 0.17 -0.6 584,732 + MPMX19_05097 0.27 +0.2 584,732 + MPMX19_05097 0.27 -2.2 584,732 + MPMX19_05097 0.27 +1.0 584,732 + MPMX19_05097 0.27 -1.1 584,732 + MPMX19_05097 0.27 -1.1 584,732 + MPMX19_05097 0.27 -1.7 584,733 - MPMX19_05097 0.27 -1.1 584,733 - MPMX19_05097 0.27 -0.6 584,733 - MPMX19_05097 0.27 -0.7 584,733 - MPMX19_05097 0.27 -1.0 584,733 - MPMX19_05097 0.27 -0.9 584,733 - MPMX19_05097 0.27 -1.1 584,733 - MPMX19_05097 0.27 +1.5 584,733 - MPMX19_05097 0.27 -0.5 584,733 - MPMX19_05097 0.27 -0.7 584,864 + MPMX19_05097 0.46 -2.3 584,864 + MPMX19_05097 0.46 -0.3 584,864 + MPMX19_05097 0.46 +1.5 584,864 + MPMX19_05097 0.46 -2.5 584,864 + MPMX19_05097 0.46 +0.9 584,864 + MPMX19_05097 0.46 -0.7 584,864 + MPMX19_05097 0.46 +0.5 584,865 - MPMX19_05097 0.46 +0.5 584,865 - MPMX19_05097 0.46 -0.3 584,865 - MPMX19_05097 0.46 +0.2 584,865 - MPMX19_05097 0.46 -1.3 584,865 - MPMX19_05097 0.46 +1.0 584,945 + MPMX19_05097 0.57 -0.6 584,945 + MPMX19_05097 0.57 +1.1 584,946 - MPMX19_05097 0.57 -1.6 584,946 - MPMX19_05097 0.57 -0.3 584,957 + MPMX19_05097 0.59 +0.9 584,957 + MPMX19_05097 0.59 +0.2 584,957 + MPMX19_05097 0.59 -1.1 584,957 + MPMX19_05097 0.59 -0.2 584,957 + MPMX19_05097 0.59 -1.6 584,957 + MPMX19_05097 0.59 -1.3 584,958 - MPMX19_05097 0.59 -0.2 584,958 - MPMX19_05097 0.59 -2.0 584,958 - MPMX19_05097 0.59 -1.2 584,958 - MPMX19_05097 0.59 +0.1 584,958 - MPMX19_05097 0.59 -0.8 584,958 - MPMX19_05097 0.59 -0.5 584,958 - MPMX19_05097 0.59 -0.6 584,958 - MPMX19_05097 0.59 +0.2 585,026 + MPMX19_05097 0.69 +1.5 585,026 + MPMX19_05097 0.69 +1.0 585,027 - MPMX19_05097 0.69 +0.0 585,027 - MPMX19_05097 0.69 -0.3 585,077 + MPMX19_05097 0.76 -2.4 585,077 + MPMX19_05097 0.76 -0.6 585,078 - MPMX19_05097 0.76 +0.2 585,078 - MPMX19_05097 0.76 +0.4 585,078 - MPMX19_05097 0.76 -1.3 585,219 - +0.4 585,318 + MPMX19_05098 0.10 +0.2 585,318 + MPMX19_05098 0.10 -0.7 585,318 + MPMX19_05098 0.10 -1.1 585,318 + MPMX19_05098 0.10 +0.7 585,318 + MPMX19_05098 0.10 -0.1 585,318 + MPMX19_05098 0.10 +0.9 585,318 + MPMX19_05098 0.10 -2.3 585,318 + MPMX19_05098 0.10 -2.7 585,318 + MPMX19_05098 0.10 -0.0 585,318 + MPMX19_05098 0.10 +0.1 585,318 + MPMX19_05098 0.10 -1.5 585,319 - MPMX19_05098 0.10 -1.2 585,319 - MPMX19_05098 0.10 +0.5 585,319 - MPMX19_05098 0.10 -1.2 585,319 - MPMX19_05098 0.10 -2.1 585,319 - MPMX19_05098 0.10 +0.5 585,319 - MPMX19_05098 0.10 -2.3 585,319 - MPMX19_05098 0.10 -0.5 585,319 - MPMX19_05098 0.10 -0.6 585,319 - MPMX19_05098 0.10 -1.3 585,319 - MPMX19_05098 0.10 -1.7 585,319 - MPMX19_05098 0.10 -0.0 585,319 - MPMX19_05098 0.10 +0.0 585,319 - MPMX19_05098 0.10 -1.4 585,319 - MPMX19_05098 0.10 -1.5 585,319 - MPMX19_05098 0.10 +0.2 585,319 - MPMX19_05098 0.10 +1.7 585,319 - MPMX19_05098 0.10 -1.1 585,339 + MPMX19_05098 0.14 -1.8 585,339 + MPMX19_05098 0.14 +0.2 585,339 + MPMX19_05098 0.14 -1.1 585,339 + MPMX19_05098 0.14 +0.5 585,339 + MPMX19_05098 0.14 +0.8 585,339 + MPMX19_05098 0.14 -0.8 585,339 + MPMX19_05098 0.14 -0.1 585,340 - MPMX19_05098 0.14 -1.3 585,340 - MPMX19_05098 0.14 -1.8 585,357 + MPMX19_05098 0.16 -0.4 585,357 + MPMX19_05098 0.16 -2.1 585,357 + MPMX19_05098 0.16 +0.9 585,357 + MPMX19_05098 0.16 -1.1 585,357 + MPMX19_05098 0.16 +1.0 585,357 + MPMX19_05098 0.16 +1.0 585,358 - MPMX19_05098 0.17 -0.7 585,358 - MPMX19_05098 0.17 +0.0 585,358 - MPMX19_05098 0.17 -0.2 585,358 - MPMX19_05098 0.17 -0.1 585,358 - MPMX19_05098 0.17 +0.2
Or see this region's nucleotide sequence