Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04984 and MPMX19_04985 are separated by 112 nucleotides MPMX19_04985 and MPMX19_04986 are separated by 122 nucleotides MPMX19_04986 and MPMX19_04987 are separated by 41 nucleotides
MPMX19_04984: MPMX19_04984 - Alcohol dehydrogenase [acceptor], at 460,524 to 462,173
_04984
MPMX19_04985: MPMX19_04985 - HTH-type transcriptional regulator DmlR, at 462,286 to 463,206
_04985
MPMX19_04986: MPMX19_04986 - hypothetical protein, at 463,329 to 463,973
_04986
MPMX19_04987: MPMX19_04987 - hypothetical protein, at 464,015 to 464,938
_04987
Position (kb) 462
463
464 Strain fitness (log2 ratio) -2
-1
0
1
2 at 461.756 kb on - strand, within MPMX19_04984 at 461.756 kb on - strand, within MPMX19_04984 at 461.837 kb on - strand, within MPMX19_04984 at 461.912 kb on - strand, within MPMX19_04984 at 461.996 kb on - strand, within MPMX19_04984 at 462.127 kb on + strand at 462.127 kb on + strand at 462.127 kb on + strand at 462.128 kb on - strand at 462.128 kb on - strand at 462.128 kb on - strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.212 kb on + strand at 462.213 kb on - strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.215 kb on + strand at 462.216 kb on - strand at 462.458 kb on + strand, within MPMX19_04985 at 462.459 kb on - strand, within MPMX19_04985 at 462.893 kb on + strand, within MPMX19_04985 at 463.172 kb on + strand at 463.172 kb on + strand at 463.172 kb on + strand at 463.173 kb on - strand at 463.173 kb on - strand at 463.173 kb on - strand at 463.242 kb on + strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.243 kb on - strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.353 kb on + strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.354 kb on - strand at 463.383 kb on + strand at 463.383 kb on + strand at 463.384 kb on - strand at 463.515 kb on + strand, within MPMX19_04986 at 463.515 kb on + strand, within MPMX19_04986 at 463.515 kb on + strand, within MPMX19_04986 at 463.516 kb on - strand, within MPMX19_04986 at 463.516 kb on - strand, within MPMX19_04986 at 463.695 kb on + strand, within MPMX19_04986 at 463.695 kb on + strand, within MPMX19_04986 at 463.696 kb on - strand, within MPMX19_04986 at 463.696 kb on - strand, within MPMX19_04986
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 461,756 - MPMX19_04984 0.75 +0.3 461,756 - MPMX19_04984 0.75 -1.0 461,837 - MPMX19_04984 0.80 +0.6 461,912 - MPMX19_04984 0.84 +0.1 461,996 - MPMX19_04984 0.89 -0.3 462,127 + -1.2 462,127 + +1.2 462,127 + -0.0 462,128 - -0.3 462,128 - +0.4 462,128 - -0.6 462,212 + +0.7 462,212 + +0.4 462,212 + -0.9 462,212 + +0.5 462,213 - +1.3 462,215 + -0.9 462,215 + -1.0 462,215 + -1.1 462,215 + -1.0 462,215 + -2.0 462,216 - +0.2 462,458 + MPMX19_04985 0.19 -1.6 462,459 - MPMX19_04985 0.19 -0.0 462,893 + MPMX19_04985 0.66 -0.5 463,172 + -0.8 463,172 + -2.5 463,172 + +0.2 463,173 - -1.6 463,173 - -0.5 463,173 - +0.8 463,242 + -0.1 463,243 - +0.2 463,243 - +0.3 463,243 - -1.1 463,243 - -0.4 463,353 + -0.6 463,353 + +0.1 463,353 + -0.0 463,353 + -1.5 463,353 + +1.4 463,353 + +1.4 463,353 + -0.8 463,353 + -0.3 463,353 + -1.4 463,353 + +0.9 463,353 + -0.1 463,353 + -0.1 463,353 + +2.4 463,353 + -0.6 463,353 + -0.6 463,353 + +0.1 463,354 - +0.6 463,354 - +0.2 463,354 - -1.0 463,354 - -0.3 463,354 - -1.4 463,354 - -0.7 463,354 - -1.8 463,354 - +0.1 463,383 + +0.3 463,383 + -0.4 463,384 - -1.2 463,515 + MPMX19_04986 0.29 +0.3 463,515 + MPMX19_04986 0.29 -0.0 463,515 + MPMX19_04986 0.29 -0.6 463,516 - MPMX19_04986 0.29 +1.1 463,516 - MPMX19_04986 0.29 +0.1 463,695 + MPMX19_04986 0.57 -0.6 463,695 + MPMX19_04986 0.57 -0.5 463,696 - MPMX19_04986 0.57 +0.1 463,696 - MPMX19_04986 0.57 -1.8
Or see this region's nucleotide sequence