Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04854 and MPMX19_04855 are separated by 289 nucleotides MPMX19_04855 and MPMX19_04856 are separated by 237 nucleotides MPMX19_04856 and MPMX19_04857 are separated by 240 nucleotides MPMX19_04857 and MPMX19_04858 are separated by 50 nucleotides
MPMX19_04854: MPMX19_04854 - Hexuronate transporter, at 271,606 to 272,889
_04854
MPMX19_04855: MPMX19_04855 - hypothetical protein, at 273,179 to 273,349
_04855
MPMX19_04856: MPMX19_04856 - Phosphoglycolate phosphatase, at 273,587 to 274,285
_04856
MPMX19_04857: MPMX19_04857 - hypothetical protein, at 274,526 to 275,020
_04857
MPMX19_04858: MPMX19_04858 - hypothetical protein, at 275,071 to 293,739
_04858
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.632 kb on + strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.633 kb on - strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.704 kb on + strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.705 kb on - strand, within MPMX19_04854 at 272.762 kb on - strand at 272.974 kb on + strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.996 kb on + strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 272.997 kb on - strand at 273.037 kb on + strand at 273.048 kb on + strand at 273.048 kb on + strand at 273.048 kb on + strand at 273.049 kb on - strand at 273.567 kb on + strand at 273.567 kb on + strand at 273.583 kb on - strand at 273.583 kb on - strand at 273.654 kb on + strand at 273.696 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.846 kb on + strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 273.847 kb on - strand, within MPMX19_04856 at 274.032 kb on + strand, within MPMX19_04856 at 274.032 kb on + strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.033 kb on - strand, within MPMX19_04856 at 274.215 kb on + strand, within MPMX19_04856 at 274.215 kb on + strand, within MPMX19_04856 at 274.216 kb on - strand at 274.216 kb on - strand at 274.216 kb on - strand at 274.216 kb on - strand at 274.386 kb on + strand at 274.429 kb on + strand at 274.429 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.463 kb on + strand at 274.464 kb on - strand at 274.464 kb on - strand at 274.610 kb on + strand, within MPMX19_04857 at 274.610 kb on + strand, within MPMX19_04857 at 274.611 kb on - strand, within MPMX19_04857 at 274.665 kb on - strand, within MPMX19_04857 at 274.665 kb on - strand, within MPMX19_04857 at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.186 kb on + strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand at 275.187 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 272,632 + MPMX19_04854 0.80 -1.6 272,632 + MPMX19_04854 0.80 -1.0 272,632 + MPMX19_04854 0.80 +0.1 272,632 + MPMX19_04854 0.80 +0.1 272,632 + MPMX19_04854 0.80 +0.8 272,632 + MPMX19_04854 0.80 +1.2 272,632 + MPMX19_04854 0.80 -0.8 272,632 + MPMX19_04854 0.80 -0.6 272,632 + MPMX19_04854 0.80 -0.5 272,632 + MPMX19_04854 0.80 -0.1 272,632 + MPMX19_04854 0.80 +1.6 272,632 + MPMX19_04854 0.80 +1.0 272,633 - MPMX19_04854 0.80 -0.2 272,633 - MPMX19_04854 0.80 -0.1 272,633 - MPMX19_04854 0.80 -1.4 272,633 - MPMX19_04854 0.80 +2.4 272,633 - MPMX19_04854 0.80 -2.1 272,633 - MPMX19_04854 0.80 -1.4 272,633 - MPMX19_04854 0.80 -1.9 272,633 - MPMX19_04854 0.80 -0.6 272,633 - MPMX19_04854 0.80 -0.5 272,633 - MPMX19_04854 0.80 -1.6 272,633 - MPMX19_04854 0.80 -0.0 272,633 - MPMX19_04854 0.80 +0.9 272,633 - MPMX19_04854 0.80 +1.7 272,704 + MPMX19_04854 0.86 -1.0 272,704 + MPMX19_04854 0.86 -0.1 272,704 + MPMX19_04854 0.86 -0.1 272,704 + MPMX19_04854 0.86 -1.2 272,704 + MPMX19_04854 0.86 -0.1 272,704 + MPMX19_04854 0.86 +0.1 272,704 + MPMX19_04854 0.86 -0.7 272,705 - MPMX19_04854 0.86 +0.2 272,705 - MPMX19_04854 0.86 -0.8 272,705 - MPMX19_04854 0.86 -1.6 272,705 - MPMX19_04854 0.86 -0.1 272,762 - -1.5 272,974 + +0.6 272,975 - +0.6 272,975 - +0.2 272,975 - -0.6 272,996 + +0.8 272,996 + -0.3 272,996 + -0.8 272,996 + -0.1 272,996 + -0.7 272,996 + -1.5 272,996 + -0.2 272,996 + -0.8 272,996 + +0.7 272,996 + -0.0 272,996 + -0.0 272,996 + +0.6 272,996 + -0.8 272,996 + -1.0 272,996 + +0.5 272,997 - +1.2 272,997 - +0.1 272,997 - +0.2 272,997 - +0.3 272,997 - -0.2 272,997 - -0.8 272,997 - +0.0 272,997 - -1.0 272,997 - -1.1 273,037 + -1.2 273,048 + -0.2 273,048 + -0.2 273,048 + -0.2 273,049 - -0.4 273,567 + +0.9 273,567 + -1.0 273,583 - -0.4 273,583 - +0.5 273,654 + -0.4 273,696 + MPMX19_04856 0.16 -2.0 273,846 + MPMX19_04856 0.37 -1.6 273,846 + MPMX19_04856 0.37 +0.9 273,846 + MPMX19_04856 0.37 +0.8 273,846 + MPMX19_04856 0.37 -0.5 273,847 - MPMX19_04856 0.37 -1.3 273,847 - MPMX19_04856 0.37 -0.4 273,847 - MPMX19_04856 0.37 -0.4 274,032 + MPMX19_04856 0.64 -0.5 274,032 + MPMX19_04856 0.64 -0.7 274,033 - MPMX19_04856 0.64 +1.4 274,033 - MPMX19_04856 0.64 -0.6 274,033 - MPMX19_04856 0.64 -1.8 274,215 + MPMX19_04856 0.90 -0.4 274,215 + MPMX19_04856 0.90 -1.9 274,216 - -0.0 274,216 - -0.3 274,216 - -0.0 274,216 - +0.2 274,386 + +0.8 274,429 + -0.4 274,429 + +0.3 274,463 + -0.6 274,463 + -0.7 274,463 + +2.2 274,463 + +3.2 274,463 + -0.8 274,463 + +1.2 274,463 + -0.4 274,464 - -0.4 274,464 - +0.3 274,610 + MPMX19_04857 0.17 -1.8 274,610 + MPMX19_04857 0.17 +1.2 274,611 - MPMX19_04857 0.17 +0.2 274,665 - MPMX19_04857 0.28 +4.7 274,665 - MPMX19_04857 0.28 +1.0 275,186 + -0.4 275,186 + -1.3 275,186 + -0.8 275,186 + -0.2 275,186 + -0.2 275,186 + -0.7 275,186 + -0.0 275,186 + -0.4 275,186 + -0.1 275,186 + +0.2 275,187 - -0.4 275,187 - +0.4 275,187 - -1.3 275,187 - -0.2 275,187 - -0.7 275,187 - +0.4 275,187 - +0.3 275,187 - -0.8 275,187 - +1.6 275,187 - -0.5 275,187 - +0.0
Or see this region's nucleotide sequence