Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04758 and MPMX19_04759 are separated by 192 nucleotides MPMX19_04759 and MPMX19_04760 are separated by 9 nucleotides
MPMX19_04758: MPMX19_04758 - Glutamine-binding periplasmic protein, at 149,124 to 149,924
_04758
MPMX19_04759: MPMX19_04759 - HTH-type transcriptional regulator LutR, at 150,117 to 150,836
_04759
MPMX19_04760: MPMX19_04760 - Sialic acid TRAP transporter large permease protein SiaM, at 150,846 to 152,126
_04760
Position (kb) 150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 149.293 kb on + strand, within MPMX19_04758 at 149.293 kb on + strand, within MPMX19_04758 at 149.294 kb on - strand, within MPMX19_04758 at 149.350 kb on + strand, within MPMX19_04758 at 149.350 kb on + strand, within MPMX19_04758 at 149.350 kb on + strand, within MPMX19_04758 at 149.351 kb on - strand, within MPMX19_04758 at 149.351 kb on - strand, within MPMX19_04758 at 149.351 kb on - strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.380 kb on + strand, within MPMX19_04758 at 149.380 kb on + strand, within MPMX19_04758 at 149.380 kb on + strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.930 kb on + strand at 149.930 kb on + strand at 149.930 kb on + strand at 149.931 kb on - strand at 149.931 kb on - strand at 150.056 kb on + strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.378 kb on + strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.396 kb on + strand, within MPMX19_04759 at 150.397 kb on - strand, within MPMX19_04759 at 150.700 kb on + strand, within MPMX19_04759 at 150.700 kb on + strand, within MPMX19_04759 at 150.701 kb on - strand, within MPMX19_04759 at 150.834 kb on + strand at 150.834 kb on + strand at 150.834 kb on + strand at 150.835 kb on - strand at 151.060 kb on + strand, within MPMX19_04760 at 151.060 kb on + strand, within MPMX19_04760 at 151.060 kb on + strand, within MPMX19_04760 at 151.061 kb on - strand, within MPMX19_04760 at 151.061 kb on - strand, within MPMX19_04760 at 151.360 kb on + strand, within MPMX19_04760 at 151.360 kb on + strand, within MPMX19_04760 at 151.361 kb on - strand, within MPMX19_04760
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 149,293 + MPMX19_04758 0.21 -1.1 149,293 + MPMX19_04758 0.21 -1.3 149,294 - MPMX19_04758 0.21 -0.3 149,350 + MPMX19_04758 0.28 -1.8 149,350 + MPMX19_04758 0.28 -0.4 149,350 + MPMX19_04758 0.28 -1.1 149,351 - MPMX19_04758 0.28 -0.4 149,351 - MPMX19_04758 0.28 -0.8 149,351 - MPMX19_04758 0.28 -0.4 149,353 + MPMX19_04758 0.29 +1.3 149,353 + MPMX19_04758 0.29 -0.4 149,353 + MPMX19_04758 0.29 +1.0 149,353 + MPMX19_04758 0.29 +0.6 149,353 + MPMX19_04758 0.29 +0.4 149,353 + MPMX19_04758 0.29 -0.2 149,353 + MPMX19_04758 0.29 -0.6 149,353 + MPMX19_04758 0.29 -0.9 149,354 - MPMX19_04758 0.29 -1.0 149,354 - MPMX19_04758 0.29 -1.0 149,354 - MPMX19_04758 0.29 +0.0 149,354 - MPMX19_04758 0.29 +0.5 149,354 - MPMX19_04758 0.29 -0.4 149,380 + MPMX19_04758 0.32 +0.9 149,380 + MPMX19_04758 0.32 +0.1 149,380 + MPMX19_04758 0.32 -0.3 149,381 - MPMX19_04758 0.32 +0.4 149,381 - MPMX19_04758 0.32 -1.9 149,381 - MPMX19_04758 0.32 +0.9 149,381 - MPMX19_04758 0.32 +0.2 149,381 - MPMX19_04758 0.32 -1.5 149,458 + MPMX19_04758 0.42 -1.1 149,458 + MPMX19_04758 0.42 -0.9 149,458 + MPMX19_04758 0.42 -0.1 149,458 + MPMX19_04758 0.42 -0.3 149,458 + MPMX19_04758 0.42 +0.7 149,459 - MPMX19_04758 0.42 -0.5 149,459 - MPMX19_04758 0.42 -0.8 149,459 - MPMX19_04758 0.42 -0.5 149,459 - MPMX19_04758 0.42 +1.2 149,459 - MPMX19_04758 0.42 +2.1 149,590 + MPMX19_04758 0.58 +0.5 149,590 + MPMX19_04758 0.58 -0.4 149,590 + MPMX19_04758 0.58 +0.9 149,590 + MPMX19_04758 0.58 +0.7 149,590 + MPMX19_04758 0.58 -0.3 149,590 + MPMX19_04758 0.58 -1.2 149,590 + MPMX19_04758 0.58 -1.2 149,591 - MPMX19_04758 0.58 -0.1 149,591 - MPMX19_04758 0.58 -0.4 149,591 - MPMX19_04758 0.58 -0.3 149,591 - MPMX19_04758 0.58 +1.9 149,591 - MPMX19_04758 0.58 -0.9 149,591 - MPMX19_04758 0.58 -0.8 149,591 - MPMX19_04758 0.58 -1.5 149,591 - MPMX19_04758 0.58 -0.1 149,591 - MPMX19_04758 0.58 -0.3 149,593 + MPMX19_04758 0.59 -1.4 149,593 + MPMX19_04758 0.59 -0.1 149,593 + MPMX19_04758 0.59 -1.6 149,593 + MPMX19_04758 0.59 +0.3 149,593 + MPMX19_04758 0.59 -1.3 149,593 + MPMX19_04758 0.59 +1.1 149,593 + MPMX19_04758 0.59 -0.6 149,594 - MPMX19_04758 0.59 -0.3 149,594 - MPMX19_04758 0.59 +2.8 149,594 - MPMX19_04758 0.59 +0.5 149,594 - MPMX19_04758 0.59 -0.6 149,594 - MPMX19_04758 0.59 -1.3 149,594 - MPMX19_04758 0.59 -1.0 149,594 - MPMX19_04758 0.59 -0.1 149,930 + -1.3 149,930 + -1.5 149,930 + -0.3 149,931 - +1.1 149,931 - +0.1 150,056 + +0.2 150,057 - -1.0 150,057 - +0.1 150,057 - +1.0 150,057 - -0.2 150,057 - -0.4 150,378 + MPMX19_04759 0.36 -2.2 150,379 - MPMX19_04759 0.36 -1.4 150,379 - MPMX19_04759 0.36 +0.4 150,379 - MPMX19_04759 0.36 -0.8 150,379 - MPMX19_04759 0.36 +0.3 150,396 + MPMX19_04759 0.39 -2.1 150,397 - MPMX19_04759 0.39 +0.3 150,700 + MPMX19_04759 0.81 +0.1 150,700 + MPMX19_04759 0.81 -0.5 150,701 - MPMX19_04759 0.81 -1.9 150,834 + -0.4 150,834 + +0.1 150,834 + -0.1 150,835 - -0.3 151,060 + MPMX19_04760 0.17 +1.2 151,060 + MPMX19_04760 0.17 +0.1 151,060 + MPMX19_04760 0.17 +0.1 151,061 - MPMX19_04760 0.17 -0.1 151,061 - MPMX19_04760 0.17 -0.7 151,360 + MPMX19_04760 0.40 +1.8 151,360 + MPMX19_04760 0.40 -0.5 151,361 - MPMX19_04760 0.40 -1.1
Or see this region's nucleotide sequence