Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04083 and MPMX19_04084 are separated by 10 nucleotides MPMX19_04084 and MPMX19_04085 are separated by 167 nucleotides MPMX19_04085 and MPMX19_04086 overlap by 4 nucleotides MPMX19_04086 and MPMX19_04087 are separated by 19 nucleotides MPMX19_04087 and MPMX19_04088 overlap by 4 nucleotides
MPMX19_04083: MPMX19_04083 - Cytochrome c-type protein SHP, at 387,135 to 387,581
_04083
MPMX19_04084: MPMX19_04084 - hypothetical protein, at 387,592 to 388,041
_04084
MPMX19_04085: MPMX19_04085 - hypothetical protein, at 388,209 to 388,562
_04085
MPMX19_04086: MPMX19_04086 - hypothetical protein, at 388,559 to 390,463
_04086
MPMX19_04087: MPMX19_04087 - Flagellum site-determining protein YlxH, at 390,483 to 391,280
_04087
MPMX19_04088: MPMX19_04088 - Signal recognition particle 54 kDa protein, at 391,277 to 392,557
_04088
Position (kb) 388
389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 387.560 kb on + strand at 387.560 kb on + strand at 387.560 kb on + strand at 387.561 kb on - strand at 387.561 kb on - strand at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 388.027 kb on + strand at 388.027 kb on + strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.162 kb on + strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.612 kb on + strand at 388.612 kb on + strand at 388.612 kb on + strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.648 kb on - strand at 388.648 kb on - strand at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.220 kb on - strand, within MPMX19_04086 at 389.545 kb on + strand, within MPMX19_04086 at 390.634 kb on + strand, within MPMX19_04087 at 390.634 kb on + strand, within MPMX19_04087 at 390.673 kb on + strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.674 kb on - strand, within MPMX19_04087 at 390.769 kb on + strand, within MPMX19_04087 at 390.770 kb on - strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.889 kb on + strand, within MPMX19_04087 at 390.890 kb on - strand, within MPMX19_04087 at 390.890 kb on - strand, within MPMX19_04087 at 391.251 kb on + strand at 391.252 kb on - strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.315 kb on + strand at 391.316 kb on - strand at 391.316 kb on - strand at 391.443 kb on + strand, within MPMX19_04088 at 391.443 kb on + strand, within MPMX19_04088 at 391.443 kb on + strand, within MPMX19_04088 at 391.443 kb on + strand, within MPMX19_04088 at 391.444 kb on - strand, within MPMX19_04088 at 391.444 kb on - strand, within MPMX19_04088 at 391.444 kb on - strand, within MPMX19_04088
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 387,560 + -1.0 387,560 + +0.4 387,560 + -0.6 387,561 - +0.1 387,561 - +0.4 387,862 + MPMX19_04084 0.60 +0.2 387,862 + MPMX19_04084 0.60 +0.8 387,862 + MPMX19_04084 0.60 -0.6 387,862 + MPMX19_04084 0.60 -0.4 387,862 + MPMX19_04084 0.60 +0.3 387,862 + MPMX19_04084 0.60 +1.1 387,862 + MPMX19_04084 0.60 -1.9 387,862 + MPMX19_04084 0.60 -1.0 387,862 + MPMX19_04084 0.60 +0.7 387,863 - MPMX19_04084 0.60 -0.3 387,863 - MPMX19_04084 0.60 -0.7 387,863 - MPMX19_04084 0.60 -1.0 387,863 - MPMX19_04084 0.60 -0.2 387,863 - MPMX19_04084 0.60 -0.4 387,863 - MPMX19_04084 0.60 -2.1 387,863 - MPMX19_04084 0.60 -0.0 388,027 + -0.2 388,027 + -1.9 388,028 - -0.2 388,028 - -0.6 388,028 - -0.4 388,028 - -0.2 388,028 - -2.2 388,028 - +0.8 388,028 - -1.3 388,028 - -1.7 388,054 + -0.6 388,054 + -2.0 388,054 + -1.0 388,054 + -1.1 388,054 + -0.9 388,054 + -1.3 388,054 + +0.1 388,054 + -1.7 388,055 - +0.3 388,055 - +0.1 388,055 - -0.2 388,055 - +0.3 388,055 - +0.1 388,055 - -1.2 388,055 - -0.7 388,055 - -1.0 388,055 - -0.6 388,055 - +0.3 388,055 - -0.4 388,055 - -1.4 388,055 - +0.4 388,055 - +0.2 388,066 + +1.2 388,066 + -0.4 388,066 + +0.6 388,066 + -0.3 388,066 + -0.0 388,066 + -0.3 388,066 + +0.3 388,066 + +0.4 388,066 + +0.8 388,066 + -1.2 388,067 - -0.0 388,067 - -1.2 388,067 - +0.2 388,067 - -2.5 388,067 - -1.9 388,162 + -0.1 388,163 - -0.4 388,163 - -2.4 388,163 - -1.7 388,163 - -0.6 388,184 + -1.2 388,184 + -2.0 388,184 + -0.0 388,193 + +0.9 388,193 + +0.7 388,193 + +0.7 388,193 + -0.7 388,193 + +0.6 388,193 + -0.2 388,196 + +0.6 388,196 + -0.0 388,196 + +0.9 388,196 + -1.7 388,196 + -1.8 388,196 + -1.7 388,196 + -0.7 388,196 + +0.5 388,196 + -0.6 388,196 + -0.4 388,196 + -1.1 388,196 + +0.1 388,196 + -1.7 388,196 + -0.0 388,196 + -1.6 388,411 + MPMX19_04085 0.57 +0.4 388,411 + MPMX19_04085 0.57 -0.2 388,411 + MPMX19_04085 0.57 -1.6 388,411 + MPMX19_04085 0.57 -2.3 388,411 + MPMX19_04085 0.57 +0.2 388,411 + MPMX19_04085 0.57 -1.2 388,411 + MPMX19_04085 0.57 -2.9 388,412 - MPMX19_04085 0.57 +0.3 388,412 - MPMX19_04085 0.57 -0.0 388,612 + +0.3 388,612 + -0.4 388,612 + -0.1 388,613 - -0.1 388,613 - +0.1 388,613 - +0.5 388,613 - +1.1 388,613 - -0.8 388,613 - -0.3 388,613 - -0.6 388,613 - -2.2 388,613 - -0.9 388,613 - +0.3 388,613 - +0.2 388,613 - -0.8 388,648 - -0.3 388,648 - +0.1 388,923 + MPMX19_04086 0.19 -0.1 388,923 + MPMX19_04086 0.19 -0.6 388,923 + MPMX19_04086 0.19 -1.1 388,923 + MPMX19_04086 0.19 -0.6 388,923 + MPMX19_04086 0.19 +0.2 388,923 + MPMX19_04086 0.19 -1.2 388,923 + MPMX19_04086 0.19 -0.0 388,923 + MPMX19_04086 0.19 -0.2 388,923 + MPMX19_04086 0.19 -0.4 388,923 + MPMX19_04086 0.19 +0.4 388,923 + MPMX19_04086 0.19 +1.6 388,923 + MPMX19_04086 0.19 -0.9 388,923 + MPMX19_04086 0.19 +0.3 388,923 + MPMX19_04086 0.19 -0.6 388,923 + MPMX19_04086 0.19 -1.6 388,923 + MPMX19_04086 0.19 +0.1 388,924 - MPMX19_04086 0.19 +0.6 388,924 - MPMX19_04086 0.19 -1.7 388,924 - MPMX19_04086 0.19 +0.3 388,924 - MPMX19_04086 0.19 -0.0 388,924 - MPMX19_04086 0.19 +1.0 388,924 - MPMX19_04086 0.19 -2.0 388,924 - MPMX19_04086 0.19 +1.4 388,924 - MPMX19_04086 0.19 +0.1 388,924 - MPMX19_04086 0.19 -0.9 388,924 - MPMX19_04086 0.19 -1.2 388,924 - MPMX19_04086 0.19 -1.2 388,924 - MPMX19_04086 0.19 -0.4 388,924 - MPMX19_04086 0.19 +0.1 388,924 - MPMX19_04086 0.19 +0.3 388,924 - MPMX19_04086 0.19 -2.3 389,220 - MPMX19_04086 0.35 -1.6 389,220 - MPMX19_04086 0.35 +0.5 389,220 - MPMX19_04086 0.35 +0.1 389,545 + MPMX19_04086 0.52 -0.7 390,634 + MPMX19_04087 0.19 -1.8 390,634 + MPMX19_04087 0.19 -2.2 390,673 + MPMX19_04087 0.24 +0.6 390,674 - MPMX19_04087 0.24 -0.4 390,674 - MPMX19_04087 0.24 -1.2 390,674 - MPMX19_04087 0.24 -0.8 390,674 - MPMX19_04087 0.24 -0.0 390,674 - MPMX19_04087 0.24 -0.0 390,674 - MPMX19_04087 0.24 -2.1 390,769 + MPMX19_04087 0.36 -1.0 390,770 - MPMX19_04087 0.36 -2.1 390,889 + MPMX19_04087 0.51 -1.8 390,889 + MPMX19_04087 0.51 -1.9 390,889 + MPMX19_04087 0.51 +0.2 390,889 + MPMX19_04087 0.51 -1.8 390,889 + MPMX19_04087 0.51 -2.2 390,889 + MPMX19_04087 0.51 -0.9 390,890 - MPMX19_04087 0.51 -2.2 390,890 - MPMX19_04087 0.51 -1.2 391,251 + -1.3 391,252 - -1.2 391,315 + +0.2 391,315 + +0.1 391,315 + -0.3 391,315 + -1.6 391,315 + -0.2 391,316 - +0.9 391,316 - +1.3 391,443 + MPMX19_04088 0.13 -0.9 391,443 + MPMX19_04088 0.13 -1.1 391,443 + MPMX19_04088 0.13 -1.6 391,443 + MPMX19_04088 0.13 -1.2 391,444 - MPMX19_04088 0.13 +0.6 391,444 - MPMX19_04088 0.13 +0.4 391,444 - MPMX19_04088 0.13 -1.5
Or see this region's nucleotide sequence