Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03989 and MPMX19_03990 are separated by 369 nucleotides
MPMX19_03989: MPMX19_03989 - Phosphate starvation-inducible protein PsiF, at 281,778 to 282,101
_03989
MPMX19_03990: MPMX19_03990 - Mannonate dehydratase, at 282,471 to 283,661
_03990
Position (kb) 281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.900 kb on + strand at 280.901 kb on - strand at 280.901 kb on - strand at 280.901 kb on - strand at 280.901 kb on - strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.911 kb on + strand at 280.912 kb on - strand at 280.912 kb on - strand at 280.912 kb on - strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.924 kb on + strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 280.925 kb on - strand at 281.134 kb on - strand at 281.134 kb on - strand at 281.134 kb on - strand at 281.134 kb on - strand at 281.160 kb on + strand at 281.160 kb on + strand at 281.161 kb on - strand at 281.161 kb on - strand at 281.161 kb on - strand at 281.161 kb on - strand at 281.198 kb on + strand at 281.198 kb on + strand at 281.198 kb on + strand at 281.198 kb on + strand at 281.199 kb on - strand at 281.214 kb on + strand at 281.321 kb on + strand at 281.321 kb on + strand at 281.321 kb on + strand at 281.321 kb on + strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.322 kb on - strand at 281.681 kb on + strand at 281.681 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.699 kb on + strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.700 kb on - strand at 281.701 kb on + strand at 281.701 kb on + strand at 281.702 kb on - strand at 281.702 kb on - strand at 281.702 kb on - strand at 281.702 kb on - strand at 281.712 kb on - strand at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.933 kb on + strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 281.934 kb on - strand, within MPMX19_03989 at 282.091 kb on + strand at 282.091 kb on + strand at 282.091 kb on + strand at 282.091 kb on + strand at 282.091 kb on + strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.092 kb on - strand at 282.240 kb on + strand at 282.240 kb on + strand at 282.240 kb on + strand at 282.241 kb on - strand at 282.241 kb on - strand at 282.414 kb on + strand at 282.559 kb on + strand at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.730 kb on + strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 282.731 kb on - strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.063 kb on + strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.064 kb on - strand, within MPMX19_03990 at 283.100 kb on - strand, within MPMX19_03990 at 283.100 kb on - strand, within MPMX19_03990
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 280,900 + -0.6 280,900 + -0.0 280,900 + +0.3 280,900 + +0.1 280,900 + -0.6 280,900 + -0.1 280,900 + -1.1 280,900 + -0.7 280,901 - +1.0 280,901 - -0.2 280,901 - -1.6 280,901 - -1.7 280,911 + -1.2 280,911 + -0.7 280,911 + -0.4 280,911 + +0.1 280,911 + +0.2 280,911 + -0.6 280,911 + +0.7 280,912 - -1.7 280,912 - -1.5 280,912 - -0.9 280,924 + +1.3 280,924 + -1.2 280,924 + +0.6 280,924 + +0.6 280,924 + -1.2 280,924 + -1.3 280,924 + -1.0 280,924 + +0.6 280,924 + -0.1 280,924 + -0.1 280,924 + -0.7 280,924 + -1.8 280,924 + -0.7 280,924 + +2.4 280,924 + -0.4 280,924 + -0.8 280,924 + -0.3 280,924 + -0.6 280,924 + -1.2 280,925 - +0.2 280,925 - +0.3 280,925 - +0.2 280,925 - +1.1 280,925 - -2.3 280,925 - -0.0 280,925 - -1.7 280,925 - -0.4 280,925 - +0.5 280,925 - -0.2 280,925 - -1.4 280,925 - +0.1 280,925 - +0.3 280,925 - +0.8 280,925 - +1.8 280,925 - -1.0 280,925 - -0.9 280,925 - -2.1 280,925 - -1.0 281,134 - +0.6 281,134 - +0.6 281,134 - -0.4 281,134 - -0.4 281,160 + -0.0 281,160 + -2.4 281,161 - +0.2 281,161 - -0.4 281,161 - -0.6 281,161 - -0.7 281,198 + +0.2 281,198 + -2.0 281,198 + +1.8 281,198 + -0.4 281,199 - -0.0 281,214 + -1.0 281,321 + -0.3 281,321 + -0.6 281,321 + +0.2 281,321 + -1.1 281,322 - -0.1 281,322 - -1.2 281,322 - -0.4 281,322 - +0.4 281,322 - -1.0 281,322 - -1.7 281,322 - -0.2 281,322 - -0.7 281,322 - +1.1 281,681 + +0.2 281,681 + +1.8 281,699 + -0.9 281,699 + +0.6 281,699 + -0.0 281,699 + -1.7 281,699 + +0.6 281,699 + -0.0 281,699 + -0.5 281,699 + -0.5 281,699 + -0.5 281,699 + -1.2 281,699 + -0.4 281,699 + -0.4 281,699 + +1.4 281,699 + -1.4 281,700 - +0.4 281,700 - -0.0 281,700 - +0.1 281,700 - -0.2 281,700 - -0.4 281,700 - -1.8 281,700 - -1.0 281,700 - +1.2 281,700 - +1.2 281,700 - -0.3 281,700 - -1.6 281,700 - -0.3 281,700 - -0.8 281,700 - -0.7 281,700 - -0.3 281,700 - +1.1 281,700 - -0.5 281,700 - -0.3 281,700 - -1.0 281,701 + -0.3 281,701 + -0.0 281,702 - -0.0 281,702 - +0.4 281,702 - -0.0 281,702 - -1.0 281,712 - -1.1 281,933 + MPMX19_03989 0.48 -0.0 281,933 + MPMX19_03989 0.48 -0.2 281,933 + MPMX19_03989 0.48 +0.4 281,933 + MPMX19_03989 0.48 -0.8 281,933 + MPMX19_03989 0.48 +0.5 281,933 + MPMX19_03989 0.48 -0.4 281,933 + MPMX19_03989 0.48 +0.5 281,933 + MPMX19_03989 0.48 -0.6 281,933 + MPMX19_03989 0.48 -2.1 281,934 - MPMX19_03989 0.48 -1.0 281,934 - MPMX19_03989 0.48 -2.2 281,934 - MPMX19_03989 0.48 -1.2 281,934 - MPMX19_03989 0.48 -0.0 281,934 - MPMX19_03989 0.48 +0.7 281,934 - MPMX19_03989 0.48 -1.7 281,934 - MPMX19_03989 0.48 -0.5 281,934 - MPMX19_03989 0.48 -1.6 281,934 - MPMX19_03989 0.48 +0.4 281,934 - MPMX19_03989 0.48 -1.4 281,934 - MPMX19_03989 0.48 -1.6 281,934 - MPMX19_03989 0.48 -1.9 281,934 - MPMX19_03989 0.48 -0.4 281,934 - MPMX19_03989 0.48 -0.2 281,934 - MPMX19_03989 0.48 -1.4 281,934 - MPMX19_03989 0.48 -2.1 282,091 + -1.1 282,091 + -1.3 282,091 + -1.7 282,091 + -0.9 282,091 + -0.9 282,092 - -0.2 282,092 - +0.3 282,092 - +0.9 282,092 - +1.3 282,092 - -1.5 282,092 - -2.8 282,240 + -0.1 282,240 + +0.8 282,240 + -0.5 282,241 - -2.0 282,241 - -0.2 282,414 + +0.9 282,559 + +0.0 282,730 + MPMX19_03990 0.22 +0.1 282,730 + MPMX19_03990 0.22 -1.1 282,730 + MPMX19_03990 0.22 -0.0 282,730 + MPMX19_03990 0.22 +0.2 282,730 + MPMX19_03990 0.22 -0.6 282,730 + MPMX19_03990 0.22 -0.3 282,730 + MPMX19_03990 0.22 -2.2 282,730 + MPMX19_03990 0.22 +0.6 282,730 + MPMX19_03990 0.22 -0.8 282,730 + MPMX19_03990 0.22 -0.3 282,730 + MPMX19_03990 0.22 -0.6 282,730 + MPMX19_03990 0.22 +0.8 282,730 + MPMX19_03990 0.22 +0.1 282,730 + MPMX19_03990 0.22 -2.2 282,730 + MPMX19_03990 0.22 -0.2 282,730 + MPMX19_03990 0.22 -0.4 282,731 - MPMX19_03990 0.22 -1.4 282,731 - MPMX19_03990 0.22 -0.4 282,731 - MPMX19_03990 0.22 -1.3 282,731 - MPMX19_03990 0.22 -1.7 282,731 - MPMX19_03990 0.22 -1.1 282,731 - MPMX19_03990 0.22 -0.0 282,731 - MPMX19_03990 0.22 +0.2 282,731 - MPMX19_03990 0.22 -0.2 283,063 + MPMX19_03990 0.50 -1.1 283,063 + MPMX19_03990 0.50 -0.8 283,063 + MPMX19_03990 0.50 -0.2 283,063 + MPMX19_03990 0.50 -0.5 283,063 + MPMX19_03990 0.50 +1.6 283,063 + MPMX19_03990 0.50 +2.2 283,064 - MPMX19_03990 0.50 +0.5 283,064 - MPMX19_03990 0.50 +1.6 283,064 - MPMX19_03990 0.50 -0.8 283,064 - MPMX19_03990 0.50 -0.0 283,064 - MPMX19_03990 0.50 +0.1 283,064 - MPMX19_03990 0.50 -2.5 283,064 - MPMX19_03990 0.50 -1.2 283,064 - MPMX19_03990 0.50 -0.7 283,100 - MPMX19_03990 0.53 -0.3 283,100 - MPMX19_03990 0.53 +0.8
Or see this region's nucleotide sequence