Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03794

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03792 and MPMX19_03793 are separated by 3 nucleotidesMPMX19_03793 and MPMX19_03794 overlap by 1 nucleotidesMPMX19_03794 and MPMX19_03795 are separated by 4 nucleotides MPMX19_03792: MPMX19_03792 - hypothetical protein, at 26,819 to 27,406 _03792 MPMX19_03793: MPMX19_03793 - hypothetical protein, at 27,410 to 27,910 _03793 MPMX19_03794: MPMX19_03794 - hypothetical protein, at 27,910 to 29,541 _03794 MPMX19_03795: MPMX19_03795 - hypothetical protein, at 29,546 to 31,087 _03795 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.452 kb on + strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.453 kb on - strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.458 kb on + strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.459 kb on - strandat 27.837 kb on - strand, within MPMX19_03793at 27.902 kb on + strandat 28.061 kb on - strandat 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.081 kb on + strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.082 kb on - strand, within MPMX19_03794at 28.267 kb on + strand, within MPMX19_03794at 28.267 kb on + strand, within MPMX19_03794at 28.268 kb on - strand, within MPMX19_03794at 28.268 kb on - strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.624 kb on + strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.625 kb on - strand, within MPMX19_03794at 28.916 kb on - strand, within MPMX19_03794at 28.916 kb on - strand, within MPMX19_03794at 29.287 kb on + strand, within MPMX19_03794at 29.288 kb on - strand, within MPMX19_03794at 29.288 kb on - strand, within MPMX19_03794at 29.390 kb on - strandat 29.530 kb on + strandat 29.531 kb on - strandat 29.531 kb on - strandat 29.531 kb on - strandat 29.729 kb on + strand, within MPMX19_03795at 29.729 kb on + strand, within MPMX19_03795at 29.729 kb on + strand, within MPMX19_03795at 29.730 kb on - strand, within MPMX19_03795at 29.730 kb on - strand, within MPMX19_03795at 29.730 kb on - strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.759 kb on + strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 29.760 kb on - strand, within MPMX19_03795at 30.383 kb on + strand, within MPMX19_03795at 30.384 kb on - strand, within MPMX19_03795at 30.401 kb on + strand, within MPMX19_03795at 30.401 kb on + strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795at 30.402 kb on - strand, within MPMX19_03795

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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27,452 + -0.8
27,452 + -0.6
27,452 + -1.0
27,452 + -0.4
27,452 + -1.0
27,452 + -0.6
27,452 + +0.2
27,452 + -0.1
27,452 + -0.7
27,453 - +0.2
27,453 - -0.2
27,453 - +0.9
27,453 - -0.7
27,453 - +0.0
27,453 - +0.4
27,453 - -0.8
27,453 - -0.6
27,453 - -0.5
27,458 + +1.2
27,458 + -0.6
27,458 + -2.1
27,458 + -0.6
27,458 + -0.5
27,458 + -1.6
27,458 + -1.0
27,458 + -0.5
27,459 - -0.8
27,459 - +0.4
27,459 - -0.5
27,459 - -0.3
27,459 - -1.9
27,459 - -2.0
27,459 - -2.0
27,837 - MPMX19_03793 0.85 -0.8
27,902 + +0.0
28,061 - -0.4
28,081 + MPMX19_03794 0.10 +2.6
28,081 + MPMX19_03794 0.10 -0.6
28,081 + MPMX19_03794 0.10 -0.7
28,081 + MPMX19_03794 0.10 -2.6
28,081 + MPMX19_03794 0.10 -1.2
28,081 + MPMX19_03794 0.10 +0.8
28,081 + MPMX19_03794 0.10 +0.7
28,081 + MPMX19_03794 0.10 +0.0
28,081 + MPMX19_03794 0.10 -0.8
28,081 + MPMX19_03794 0.10 +0.6
28,081 + MPMX19_03794 0.10 +0.0
28,082 - MPMX19_03794 0.11 +0.4
28,082 - MPMX19_03794 0.11 -1.5
28,082 - MPMX19_03794 0.11 +0.6
28,082 - MPMX19_03794 0.11 -0.2
28,082 - MPMX19_03794 0.11 -0.3
28,082 - MPMX19_03794 0.11 -0.8
28,082 - MPMX19_03794 0.11 -1.2
28,082 - MPMX19_03794 0.11 -1.7
28,082 - MPMX19_03794 0.11 +0.4
28,082 - MPMX19_03794 0.11 +0.2
28,267 + MPMX19_03794 0.22 -0.3
28,267 + MPMX19_03794 0.22 +0.6
28,268 - MPMX19_03794 0.22 -0.4
28,268 - MPMX19_03794 0.22 -0.1
28,624 + MPMX19_03794 0.44 -1.0
28,624 + MPMX19_03794 0.44 +1.0
28,624 + MPMX19_03794 0.44 -0.3
28,624 + MPMX19_03794 0.44 -1.0
28,624 + MPMX19_03794 0.44 -1.3
28,624 + MPMX19_03794 0.44 -0.8
28,624 + MPMX19_03794 0.44 -1.4
28,624 + MPMX19_03794 0.44 -0.2
28,624 + MPMX19_03794 0.44 -0.7
28,624 + MPMX19_03794 0.44 +0.4
28,624 + MPMX19_03794 0.44 +0.0
28,624 + MPMX19_03794 0.44 -0.4
28,624 + MPMX19_03794 0.44 -0.2
28,624 + MPMX19_03794 0.44 -0.5
28,625 - MPMX19_03794 0.44 +0.0
28,625 - MPMX19_03794 0.44 +0.1
28,625 - MPMX19_03794 0.44 +0.9
28,625 - MPMX19_03794 0.44 -1.2
28,625 - MPMX19_03794 0.44 +0.5
28,625 - MPMX19_03794 0.44 -1.7
28,625 - MPMX19_03794 0.44 -0.9
28,625 - MPMX19_03794 0.44 -1.4
28,625 - MPMX19_03794 0.44 -1.4
28,625 - MPMX19_03794 0.44 +0.7
28,625 - MPMX19_03794 0.44 +0.3
28,625 - MPMX19_03794 0.44 -0.3
28,625 - MPMX19_03794 0.44 +0.0
28,916 - MPMX19_03794 0.62 -0.1
28,916 - MPMX19_03794 0.62 -1.0
29,287 + MPMX19_03794 0.84 -0.6
29,288 - MPMX19_03794 0.84 -0.5
29,288 - MPMX19_03794 0.84 -1.0
29,390 - +0.2
29,530 + +1.1
29,531 - -1.4
29,531 - -0.8
29,531 - -0.5
29,729 + MPMX19_03795 0.12 -0.7
29,729 + MPMX19_03795 0.12 -1.0
29,729 + MPMX19_03795 0.12 +0.5
29,730 - MPMX19_03795 0.12 -2.5
29,730 - MPMX19_03795 0.12 -1.8
29,730 - MPMX19_03795 0.12 -1.1
29,759 + MPMX19_03795 0.14 -2.8
29,759 + MPMX19_03795 0.14 -0.3
29,759 + MPMX19_03795 0.14 +1.4
29,759 + MPMX19_03795 0.14 -1.2
29,759 + MPMX19_03795 0.14 -0.3
29,759 + MPMX19_03795 0.14 -0.4
29,760 - MPMX19_03795 0.14 -0.4
29,760 - MPMX19_03795 0.14 +0.0
29,760 - MPMX19_03795 0.14 +0.0
29,760 - MPMX19_03795 0.14 -1.8
30,383 + MPMX19_03795 0.54 -1.0
30,384 - MPMX19_03795 0.54 -0.6
30,401 + MPMX19_03795 0.55 -1.2
30,401 + MPMX19_03795 0.55 -0.4
30,402 - MPMX19_03795 0.56 -0.9
30,402 - MPMX19_03795 0.56 -0.7
30,402 - MPMX19_03795 0.56 -0.4
30,402 - MPMX19_03795 0.56 -2.2
30,402 - MPMX19_03795 0.56 -0.4
30,402 - MPMX19_03795 0.56 +0.2
30,402 - MPMX19_03795 0.56 +0.4
30,402 - MPMX19_03795 0.56 -0.2
30,402 - MPMX19_03795 0.56 +0.4

Or see this region's nucleotide sequence