Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03786

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03783 and MPMX19_03784 overlap by 4 nucleotidesMPMX19_03784 and MPMX19_03785 overlap by 4 nucleotidesMPMX19_03785 and MPMX19_03786 overlap by 1 nucleotidesMPMX19_03786 and MPMX19_03787 overlap by 4 nucleotidesMPMX19_03787 and MPMX19_03788 are separated by 2 nucleotidesMPMX19_03788 and MPMX19_03789 are separated by 52 nucleotides MPMX19_03783: MPMX19_03783 - hypothetical protein, at 23,135 to 23,893 _03783 MPMX19_03784: MPMX19_03784 - hypothetical protein, at 23,890 to 24,132 _03784 MPMX19_03785: MPMX19_03785 - hypothetical protein, at 24,129 to 24,392 _03785 MPMX19_03786: MPMX19_03786 - hypothetical protein, at 24,392 to 24,667 _03786 MPMX19_03787: MPMX19_03787 - hypothetical protein, at 24,664 to 25,137 _03787 MPMX19_03788: MPMX19_03788 - hypothetical protein, at 25,140 to 25,589 _03788 MPMX19_03789: MPMX19_03789 - hypothetical protein, at 25,642 to 26,169 _03789 Position (kb) 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 23.474 kb on + strand, within MPMX19_03783at 23.475 kb on - strand, within MPMX19_03783at 23.475 kb on - strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.522 kb on + strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.523 kb on - strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.669 kb on + strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.670 kb on - strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.684 kb on + strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.685 kb on - strand, within MPMX19_03783at 23.731 kb on + strand, within MPMX19_03783at 23.744 kb on + strand, within MPMX19_03783at 23.745 kb on - strand, within MPMX19_03783at 23.745 kb on - strand, within MPMX19_03783at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.923 kb on + strand, within MPMX19_03784at 23.924 kb on - strand, within MPMX19_03784at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.584 kb on + strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.585 kb on - strand, within MPMX19_03786at 24.922 kb on + strand, within MPMX19_03787at 24.923 kb on - strand, within MPMX19_03787at 24.923 kb on - strand, within MPMX19_03787at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.385 kb on + strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.386 kb on - strand, within MPMX19_03788at 25.421 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.461 kb on + strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.462 kb on - strand, within MPMX19_03788at 25.587 kb on + strandat 25.587 kb on + strandat 25.587 kb on + strandat 25.588 kb on - strandat 25.588 kb on - strandat 25.598 kb on + strandat 25.598 kb on + strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.599 kb on - strandat 25.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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23,474 + MPMX19_03783 0.45 +0.6
23,475 - MPMX19_03783 0.45 -2.5
23,475 - MPMX19_03783 0.45 +0.0
23,522 + MPMX19_03783 0.51 +0.6
23,522 + MPMX19_03783 0.51 +0.2
23,522 + MPMX19_03783 0.51 -0.8
23,522 + MPMX19_03783 0.51 -0.4
23,522 + MPMX19_03783 0.51 -1.2
23,522 + MPMX19_03783 0.51 -0.6
23,522 + MPMX19_03783 0.51 -1.1
23,523 - MPMX19_03783 0.51 +0.6
23,523 - MPMX19_03783 0.51 +0.0
23,523 - MPMX19_03783 0.51 -0.4
23,523 - MPMX19_03783 0.51 +0.1
23,523 - MPMX19_03783 0.51 -0.4
23,523 - MPMX19_03783 0.51 +1.6
23,523 - MPMX19_03783 0.51 -1.4
23,523 - MPMX19_03783 0.51 -0.5
23,523 - MPMX19_03783 0.51 -0.9
23,523 - MPMX19_03783 0.51 -2.0
23,523 - MPMX19_03783 0.51 +1.0
23,669 + MPMX19_03783 0.70 -0.6
23,669 + MPMX19_03783 0.70 +0.4
23,669 + MPMX19_03783 0.70 +0.0
23,669 + MPMX19_03783 0.70 +0.4
23,669 + MPMX19_03783 0.70 +0.4
23,669 + MPMX19_03783 0.70 -1.8
23,669 + MPMX19_03783 0.70 -0.5
23,669 + MPMX19_03783 0.70 +0.4
23,669 + MPMX19_03783 0.70 +0.1
23,670 - MPMX19_03783 0.70 +0.1
23,670 - MPMX19_03783 0.70 -0.8
23,670 - MPMX19_03783 0.70 +0.9
23,670 - MPMX19_03783 0.70 +0.2
23,670 - MPMX19_03783 0.70 +0.6
23,684 + MPMX19_03783 0.72 -2.3
23,684 + MPMX19_03783 0.72 -0.1
23,684 + MPMX19_03783 0.72 -1.8
23,684 + MPMX19_03783 0.72 -0.7
23,684 + MPMX19_03783 0.72 +0.2
23,684 + MPMX19_03783 0.72 -2.1
23,684 + MPMX19_03783 0.72 -0.7
23,684 + MPMX19_03783 0.72 -0.3
23,684 + MPMX19_03783 0.72 -0.7
23,685 - MPMX19_03783 0.72 -0.8
23,685 - MPMX19_03783 0.72 -0.4
23,685 - MPMX19_03783 0.72 -0.0
23,685 - MPMX19_03783 0.72 -2.5
23,685 - MPMX19_03783 0.72 -2.3
23,685 - MPMX19_03783 0.72 +0.7
23,685 - MPMX19_03783 0.72 -1.1
23,685 - MPMX19_03783 0.72 -2.3
23,685 - MPMX19_03783 0.72 -1.2
23,731 + MPMX19_03783 0.79 -0.1
23,744 + MPMX19_03783 0.80 +0.7
23,745 - MPMX19_03783 0.80 +0.0
23,745 - MPMX19_03783 0.80 -2.3
23,923 + MPMX19_03784 0.14 +0.2
23,923 + MPMX19_03784 0.14 -0.7
23,923 + MPMX19_03784 0.14 -2.6
23,923 + MPMX19_03784 0.14 +0.6
23,923 + MPMX19_03784 0.14 +0.5
23,924 - MPMX19_03784 0.14 -2.1
24,584 + MPMX19_03786 0.70 -0.0
24,584 + MPMX19_03786 0.70 +1.8
24,584 + MPMX19_03786 0.70 +0.6
24,584 + MPMX19_03786 0.70 +1.0
24,584 + MPMX19_03786 0.70 -0.1
24,585 - MPMX19_03786 0.70 -0.8
24,585 - MPMX19_03786 0.70 +0.9
24,585 - MPMX19_03786 0.70 +0.2
24,585 - MPMX19_03786 0.70 +0.3
24,585 - MPMX19_03786 0.70 +0.0
24,585 - MPMX19_03786 0.70 -0.9
24,585 - MPMX19_03786 0.70 -0.3
24,585 - MPMX19_03786 0.70 +2.0
24,922 + MPMX19_03787 0.54 -0.8
24,923 - MPMX19_03787 0.55 -0.0
24,923 - MPMX19_03787 0.55 +0.1
25,385 + MPMX19_03788 0.54 +1.0
25,385 + MPMX19_03788 0.54 -1.0
25,385 + MPMX19_03788 0.54 -1.7
25,385 + MPMX19_03788 0.54 -0.8
25,386 - MPMX19_03788 0.55 -0.8
25,386 - MPMX19_03788 0.55 +0.4
25,386 - MPMX19_03788 0.55 -0.5
25,421 + MPMX19_03788 0.62 -1.1
25,461 + MPMX19_03788 0.71 -0.4
25,461 + MPMX19_03788 0.71 +0.6
25,461 + MPMX19_03788 0.71 -1.1
25,461 + MPMX19_03788 0.71 +1.0
25,462 - MPMX19_03788 0.72 -0.4
25,462 - MPMX19_03788 0.72 -1.6
25,462 - MPMX19_03788 0.72 -1.3
25,462 - MPMX19_03788 0.72 +0.3
25,462 - MPMX19_03788 0.72 -0.8
25,462 - MPMX19_03788 0.72 -0.7
25,462 - MPMX19_03788 0.72 -1.7
25,462 - MPMX19_03788 0.72 -1.8
25,587 + -0.1
25,587 + +0.0
25,587 + -0.4
25,588 - -0.3
25,588 - -1.3
25,598 + -0.4
25,598 + -2.2
25,599 - +0.2
25,599 - -0.3
25,599 - -0.1
25,599 - -0.6

Or see this region's nucleotide sequence