Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03544 and MPMX19_03545 overlap by 1 nucleotides MPMX19_03545 and MPMX19_03546 are separated by 107 nucleotides
MPMX19_03544: MPMX19_03544 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 964,220 to 965,431
_03544
MPMX19_03545: MPMX19_03545 - Ectoine hydrolase, at 965,431 to 966,570
_03545
MPMX19_03546: MPMX19_03546 - Succinyl-diaminopimelate desuccinylase, at 966,678 to 968,225
_03546
Position (kb) 965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.538 kb on + strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.539 kb on - strand, within MPMX19_03544 at 964.580 kb on + strand, within MPMX19_03544 at 964.580 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.646 kb on + strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 964.647 kb on - strand, within MPMX19_03544 at 965.027 kb on + strand, within MPMX19_03544 at 965.211 kb on - strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.267 kb on + strand, within MPMX19_03544 at 965.268 kb on - strand, within MPMX19_03544 at 965.268 kb on - strand, within MPMX19_03544 at 965.268 kb on - strand, within MPMX19_03544 at 965.339 kb on + strand at 965.339 kb on + strand at 965.339 kb on + strand at 965.339 kb on + strand at 965.339 kb on + strand at 965.378 kb on + strand at 965.379 kb on - strand at 965.379 kb on - strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.399 kb on + strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.400 kb on - strand at 965.555 kb on - strand, within MPMX19_03545 at 965.555 kb on - strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.773 kb on + strand, within MPMX19_03545 at 965.774 kb on - strand, within MPMX19_03545 at 966.163 kb on + strand, within MPMX19_03545 at 966.163 kb on + strand, within MPMX19_03545 at 966.164 kb on - strand, within MPMX19_03545 at 966.164 kb on - strand, within MPMX19_03545 at 966.346 kb on + strand, within MPMX19_03545 at 966.364 kb on + strand, within MPMX19_03545 at 966.364 kb on + strand, within MPMX19_03545 at 966.379 kb on + strand, within MPMX19_03545 at 966.380 kb on - strand, within MPMX19_03545 at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.469 kb on + strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.470 kb on - strand at 966.625 kb on + strand at 966.626 kb on - strand at 966.723 kb on + strand at 966.754 kb on + strand at 966.754 kb on + strand at 966.754 kb on + strand at 966.754 kb on + strand at 966.754 kb on + strand at 966.754 kb on + strand at 966.755 kb on - strand at 966.755 kb on - strand at 966.880 kb on + strand, within MPMX19_03546 at 966.880 kb on + strand, within MPMX19_03546 at 966.880 kb on + strand, within MPMX19_03546 at 966.881 kb on - strand, within MPMX19_03546 at 966.881 kb on - strand, within MPMX19_03546 at 966.881 kb on - strand, within MPMX19_03546 at 966.881 kb on - strand, within MPMX19_03546 at 966.881 kb on - strand, within MPMX19_03546 at 966.881 kb on - strand, within MPMX19_03546 at 966.994 kb on + strand, within MPMX19_03546 at 966.994 kb on + strand, within MPMX19_03546 at 966.994 kb on + strand, within MPMX19_03546 at 966.995 kb on - strand, within MPMX19_03546 at 966.995 kb on - strand, within MPMX19_03546 at 966.995 kb on - strand, within MPMX19_03546 at 966.995 kb on - strand, within MPMX19_03546 at 966.995 kb on - strand, within MPMX19_03546 at 966.995 kb on - strand, within MPMX19_03546 at 966.995 kb on - strand, within MPMX19_03546 at 967.039 kb on + strand, within MPMX19_03546 at 967.040 kb on - strand, within MPMX19_03546 at 967.040 kb on - strand, within MPMX19_03546 at 967.222 kb on + strand, within MPMX19_03546 at 967.222 kb on + strand, within MPMX19_03546 at 967.222 kb on + strand, within MPMX19_03546 at 967.222 kb on + strand, within MPMX19_03546 at 967.222 kb on + strand, within MPMX19_03546 at 967.222 kb on + strand, within MPMX19_03546 at 967.222 kb on + strand, within MPMX19_03546 at 967.223 kb on - strand, within MPMX19_03546 at 967.223 kb on - strand, within MPMX19_03546 at 967.223 kb on - strand, within MPMX19_03546 at 967.339 kb on + strand, within MPMX19_03546 at 967.340 kb on - strand, within MPMX19_03546 at 967.340 kb on - strand, within MPMX19_03546 at 967.340 kb on - strand, within MPMX19_03546 at 967.340 kb on - strand, within MPMX19_03546 at 967.340 kb on - strand, within MPMX19_03546 at 967.340 kb on - strand, within MPMX19_03546 at 967.342 kb on + strand, within MPMX19_03546 at 967.343 kb on - strand, within MPMX19_03546 at 967.343 kb on - strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.424 kb on - strand, within MPMX19_03546
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 964,538 + MPMX19_03544 0.26 +0.6 964,538 + MPMX19_03544 0.26 -0.1 964,538 + MPMX19_03544 0.26 -0.5 964,538 + MPMX19_03544 0.26 -1.5 964,538 + MPMX19_03544 0.26 -0.6 964,539 - MPMX19_03544 0.26 +0.1 964,539 - MPMX19_03544 0.26 -0.9 964,539 - MPMX19_03544 0.26 -0.8 964,539 - MPMX19_03544 0.26 -0.8 964,539 - MPMX19_03544 0.26 -1.1 964,539 - MPMX19_03544 0.26 +0.1 964,539 - MPMX19_03544 0.26 -1.2 964,539 - MPMX19_03544 0.26 -2.1 964,580 + MPMX19_03544 0.30 -1.3 964,580 + MPMX19_03544 0.30 -1.8 964,646 + MPMX19_03544 0.35 -0.5 964,646 + MPMX19_03544 0.35 +0.2 964,646 + MPMX19_03544 0.35 -1.5 964,646 + MPMX19_03544 0.35 -0.5 964,646 + MPMX19_03544 0.35 -0.6 964,646 + MPMX19_03544 0.35 +0.1 964,646 + MPMX19_03544 0.35 +0.1 964,646 + MPMX19_03544 0.35 -0.1 964,646 + MPMX19_03544 0.35 +0.1 964,646 + MPMX19_03544 0.35 -2.3 964,647 - MPMX19_03544 0.35 -0.1 964,647 - MPMX19_03544 0.35 -0.8 964,647 - MPMX19_03544 0.35 -0.2 964,647 - MPMX19_03544 0.35 +0.5 964,647 - MPMX19_03544 0.35 -0.3 964,647 - MPMX19_03544 0.35 +0.3 964,647 - MPMX19_03544 0.35 -1.5 964,647 - MPMX19_03544 0.35 -0.7 964,647 - MPMX19_03544 0.35 -1.6 964,647 - MPMX19_03544 0.35 -0.5 964,647 - MPMX19_03544 0.35 -1.4 964,647 - MPMX19_03544 0.35 +0.9 965,027 + MPMX19_03544 0.67 -0.6 965,211 - MPMX19_03544 0.82 +0.5 965,267 + MPMX19_03544 0.86 -0.3 965,267 + MPMX19_03544 0.86 +0.4 965,267 + MPMX19_03544 0.86 +0.4 965,267 + MPMX19_03544 0.86 -0.5 965,267 + MPMX19_03544 0.86 -1.1 965,268 - MPMX19_03544 0.86 +0.5 965,268 - MPMX19_03544 0.86 -0.6 965,268 - MPMX19_03544 0.86 -2.3 965,339 + -0.2 965,339 + -2.1 965,339 + +0.4 965,339 + -0.9 965,339 + -0.1 965,378 + -0.6 965,379 - -0.3 965,379 - -0.8 965,399 + -1.5 965,399 + -2.5 965,399 + -0.2 965,399 + -1.6 965,399 + -0.3 965,399 + -0.1 965,399 + -0.4 965,399 + +0.3 965,399 + -1.5 965,399 + +1.3 965,399 + -0.3 965,399 + -1.8 965,399 + +0.2 965,399 + +0.5 965,399 + -0.1 965,400 - -1.2 965,400 - -0.5 965,400 - -1.1 965,400 - -0.4 965,400 - -0.1 965,400 - +0.2 965,555 - MPMX19_03545 0.11 +0.4 965,555 - MPMX19_03545 0.11 +0.0 965,773 + MPMX19_03545 0.30 -0.5 965,773 + MPMX19_03545 0.30 -0.3 965,773 + MPMX19_03545 0.30 -0.1 965,773 + MPMX19_03545 0.30 -0.6 965,773 + MPMX19_03545 0.30 -0.6 965,774 - MPMX19_03545 0.30 +0.9 966,163 + MPMX19_03545 0.64 -0.9 966,163 + MPMX19_03545 0.64 -0.4 966,164 - MPMX19_03545 0.64 +0.8 966,164 - MPMX19_03545 0.64 -1.7 966,346 + MPMX19_03545 0.80 +1.5 966,364 + MPMX19_03545 0.82 -0.2 966,364 + MPMX19_03545 0.82 -0.3 966,379 + MPMX19_03545 0.83 -1.0 966,380 - MPMX19_03545 0.83 -2.1 966,469 + +0.5 966,469 + -0.6 966,469 + +0.4 966,469 + -0.6 966,469 + -1.1 966,469 + +1.1 966,469 + +0.3 966,469 + -0.1 966,469 + -1.0 966,469 + +1.2 966,469 + -1.1 966,469 + -0.6 966,469 + -0.1 966,469 + -0.3 966,469 + -1.1 966,469 + +0.1 966,469 + -0.6 966,469 + +0.1 966,469 + -1.3 966,470 - -0.6 966,470 - +1.9 966,470 - -0.5 966,470 - +0.1 966,470 - +0.2 966,470 - -0.2 966,470 - -1.7 966,470 - +0.2 966,470 - -1.6 966,470 - +0.1 966,470 - -0.1 966,470 - -0.1 966,470 - -0.0 966,470 - -0.9 966,470 - +0.2 966,470 - -0.3 966,470 - +0.8 966,470 - -0.3 966,470 - -1.6 966,470 - -1.4 966,625 + -0.3 966,626 - -0.2 966,723 + +0.9 966,754 + +0.6 966,754 + +0.0 966,754 + +0.8 966,754 + -0.7 966,754 + -0.5 966,754 + -0.6 966,755 - +0.6 966,755 - -0.4 966,880 + MPMX19_03546 0.13 -1.7 966,880 + MPMX19_03546 0.13 +0.5 966,880 + MPMX19_03546 0.13 -0.3 966,881 - MPMX19_03546 0.13 -0.2 966,881 - MPMX19_03546 0.13 -2.9 966,881 - MPMX19_03546 0.13 -1.6 966,881 - MPMX19_03546 0.13 -0.6 966,881 - MPMX19_03546 0.13 -0.2 966,881 - MPMX19_03546 0.13 +0.3 966,994 + MPMX19_03546 0.20 -1.6 966,994 + MPMX19_03546 0.20 +0.2 966,994 + MPMX19_03546 0.20 +3.1 966,995 - MPMX19_03546 0.20 -0.4 966,995 - MPMX19_03546 0.20 -1.6 966,995 - MPMX19_03546 0.20 -0.7 966,995 - MPMX19_03546 0.20 -0.5 966,995 - MPMX19_03546 0.20 -2.1 966,995 - MPMX19_03546 0.20 -0.2 966,995 - MPMX19_03546 0.20 -0.5 967,039 + MPMX19_03546 0.23 +0.0 967,040 - MPMX19_03546 0.23 -1.6 967,040 - MPMX19_03546 0.23 -1.1 967,222 + MPMX19_03546 0.35 -0.6 967,222 + MPMX19_03546 0.35 +0.4 967,222 + MPMX19_03546 0.35 -0.6 967,222 + MPMX19_03546 0.35 +0.4 967,222 + MPMX19_03546 0.35 -0.5 967,222 + MPMX19_03546 0.35 +0.2 967,222 + MPMX19_03546 0.35 -1.3 967,223 - MPMX19_03546 0.35 -0.9 967,223 - MPMX19_03546 0.35 -0.6 967,223 - MPMX19_03546 0.35 -0.8 967,339 + MPMX19_03546 0.43 -0.7 967,340 - MPMX19_03546 0.43 -0.7 967,340 - MPMX19_03546 0.43 -1.5 967,340 - MPMX19_03546 0.43 +1.3 967,340 - MPMX19_03546 0.43 -0.7 967,340 - MPMX19_03546 0.43 -0.7 967,340 - MPMX19_03546 0.43 +0.6 967,342 + MPMX19_03546 0.43 -2.2 967,343 - MPMX19_03546 0.43 -0.5 967,343 - MPMX19_03546 0.43 -0.8 967,423 + MPMX19_03546 0.48 -0.8 967,423 + MPMX19_03546 0.48 +0.1 967,423 + MPMX19_03546 0.48 -0.4 967,423 + MPMX19_03546 0.48 +1.0 967,423 + MPMX19_03546 0.48 -0.7 967,423 + MPMX19_03546 0.48 +0.3 967,423 + MPMX19_03546 0.48 +0.3 967,423 + MPMX19_03546 0.48 -0.2 967,424 - MPMX19_03546 0.48 -1.4
Or see this region's nucleotide sequence