Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03082 and MPMX19_03083 are separated by 235 nucleotides MPMX19_03083 and MPMX19_03084 are separated by 92 nucleotides MPMX19_03084 and MPMX19_03085 are separated by 123 nucleotides
MPMX19_03082: MPMX19_03082 - ECF RNA polymerase sigma factor SigE, at 351,283 to 351,807
_03082
MPMX19_03083: MPMX19_03083 - hypothetical protein, at 352,043 to 352,249
_03083
MPMX19_03084: MPMX19_03084 - Catalase-peroxidase, at 352,342 to 354,573
_03084
MPMX19_03085: MPMX19_03085 - Hydrogen peroxide-inducible genes activator, at 354,697 to 355,593
_03085
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -2
-1
0
1 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.392 kb on + strand, within MPMX19_03082 at 351.393 kb on - strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.789 kb on + strand at 351.789 kb on + strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.939 kb on - strand at 351.953 kb on + strand at 351.972 kb on - strand at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 353.304 kb on - strand, within MPMX19_03084 at 353.411 kb on + strand, within MPMX19_03084 at 353.412 kb on - strand, within MPMX19_03084 at 353.412 kb on - strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.948 kb on + strand, within MPMX19_03084 at 354.113 kb on + strand, within MPMX19_03084 at 354.113 kb on + strand, within MPMX19_03084 at 354.114 kb on - strand, within MPMX19_03084 at 354.114 kb on - strand, within MPMX19_03084 at 354.114 kb on - strand, within MPMX19_03084 at 354.239 kb on + strand, within MPMX19_03084 at 354.239 kb on + strand, within MPMX19_03084 at 354.240 kb on - strand, within MPMX19_03084 at 354.240 kb on - strand, within MPMX19_03084 at 354.284 kb on + strand, within MPMX19_03084 at 354.285 kb on - strand, within MPMX19_03084 at 354.387 kb on - strand at 354.387 kb on - strand at 354.696 kb on + strand at 354.696 kb on + strand at 354.696 kb on + strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.733 kb on + strand at 354.733 kb on + strand at 354.733 kb on + strand at 354.734 kb on - strand at 355.021 kb on + strand, within MPMX19_03085 at 355.021 kb on + strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 351,344 + MPMX19_03082 0.12 -0.1 351,344 + MPMX19_03082 0.12 -0.3 351,344 + MPMX19_03082 0.12 +0.1 351,344 + MPMX19_03082 0.12 +0.6 351,344 + MPMX19_03082 0.12 +0.4 351,344 + MPMX19_03082 0.12 +0.2 351,344 + MPMX19_03082 0.12 -0.2 351,345 - MPMX19_03082 0.12 -1.6 351,345 - MPMX19_03082 0.12 +0.3 351,392 + MPMX19_03082 0.21 -1.6 351,393 - MPMX19_03082 0.21 -1.3 351,413 + MPMX19_03082 0.25 -2.5 351,413 + MPMX19_03082 0.25 -0.4 351,413 + MPMX19_03082 0.25 -0.4 351,413 + MPMX19_03082 0.25 -0.2 351,413 + MPMX19_03082 0.25 -1.2 351,413 + MPMX19_03082 0.25 -2.1 351,413 + MPMX19_03082 0.25 -0.7 351,413 + MPMX19_03082 0.25 +0.4 351,413 + MPMX19_03082 0.25 -1.0 351,413 + MPMX19_03082 0.25 -0.8 351,413 + MPMX19_03082 0.25 -0.2 351,414 - MPMX19_03082 0.25 -0.2 351,414 - MPMX19_03082 0.25 -0.7 351,414 - MPMX19_03082 0.25 -1.4 351,414 - MPMX19_03082 0.25 -0.1 351,414 - MPMX19_03082 0.25 +1.4 351,414 - MPMX19_03082 0.25 -1.2 351,414 - MPMX19_03082 0.25 -0.4 351,614 + MPMX19_03082 0.63 -2.4 351,614 + MPMX19_03082 0.63 +0.3 351,614 + MPMX19_03082 0.63 -0.1 351,614 + MPMX19_03082 0.63 -0.2 351,614 + MPMX19_03082 0.63 +0.0 351,615 - MPMX19_03082 0.63 -1.3 351,615 - MPMX19_03082 0.63 -0.9 351,615 - MPMX19_03082 0.63 -0.6 351,615 - MPMX19_03082 0.63 +0.3 351,615 - MPMX19_03082 0.63 +1.6 351,615 - MPMX19_03082 0.63 +1.1 351,615 - MPMX19_03082 0.63 -0.4 351,615 - MPMX19_03082 0.63 +0.0 351,615 - MPMX19_03082 0.63 +0.0 351,789 + -0.2 351,789 + +0.0 351,790 - +0.0 351,790 - -0.2 351,790 - -0.9 351,790 - -1.3 351,790 - -0.2 351,936 + -0.6 351,936 + +0.4 351,936 + +0.0 351,936 + -0.2 351,936 + -0.6 351,936 + -1.9 351,936 + -1.1 351,939 - -0.7 351,953 + -2.0 351,972 - +1.2 352,167 + MPMX19_03083 0.60 +1.4 352,167 + MPMX19_03083 0.60 -1.4 352,167 + MPMX19_03083 0.60 +0.0 352,167 + MPMX19_03083 0.60 -1.5 352,168 - MPMX19_03083 0.60 +0.9 352,168 - MPMX19_03083 0.60 +0.0 352,168 - MPMX19_03083 0.60 -1.2 352,168 - MPMX19_03083 0.60 -0.1 352,168 - MPMX19_03083 0.60 -2.1 352,262 + +0.6 352,262 + -0.2 352,262 + -0.7 352,262 + +1.4 352,262 + -0.0 352,262 + +0.6 352,262 + +0.4 352,262 + -0.4 352,262 + -0.1 352,262 + -0.7 352,262 + -0.2 352,262 + +0.2 352,262 + -2.5 352,262 + +0.3 352,262 + -0.1 352,262 + -1.9 352,262 + -0.2 352,262 + +0.0 352,262 + -0.4 352,262 + -1.0 352,262 + -1.4 352,263 - +0.9 352,263 - -0.8 352,263 - +0.4 352,263 - +0.5 352,263 - -0.4 352,263 - -0.9 352,263 - -0.7 352,263 - +0.4 352,263 - +1.4 352,263 - -0.3 352,263 - +0.3 352,263 - -0.6 352,263 - -1.3 352,445 + -0.6 352,445 + -0.0 352,445 + +0.8 352,445 + -1.2 352,445 + -0.6 352,445 + +0.2 352,445 + +0.3 352,445 + +0.4 352,445 + +0.8 352,445 + -2.0 352,445 + -1.2 352,445 + -0.4 352,445 + +0.2 352,445 + -1.6 352,445 + +0.0 352,445 + -0.2 352,445 + -0.2 352,446 - -1.0 352,446 - -0.6 352,446 - -1.2 352,446 - +0.0 352,446 - +0.5 352,446 - -0.2 352,446 - -0.1 352,446 - -0.2 352,446 - -0.9 352,446 - -0.2 352,446 - -0.2 352,446 - -1.2 352,446 - +0.1 352,446 - +0.6 352,446 - +1.4 352,547 + +0.6 352,547 + -1.5 352,547 + -2.2 352,547 + -0.7 352,547 + -1.1 352,547 + -1.0 352,547 + +0.0 352,547 + -0.6 352,547 + -0.6 352,548 - -0.7 352,548 - +0.7 352,548 - -0.6 352,548 - -1.0 352,548 - -0.4 352,548 - +0.1 352,548 - +0.3 352,548 - +0.0 352,548 - +0.7 352,793 + MPMX19_03084 0.20 +0.4 352,793 + MPMX19_03084 0.20 +0.2 352,793 + MPMX19_03084 0.20 -0.7 352,793 + MPMX19_03084 0.20 +0.6 352,793 + MPMX19_03084 0.20 +0.9 352,793 + MPMX19_03084 0.20 -0.8 352,793 + MPMX19_03084 0.20 +1.2 352,793 + MPMX19_03084 0.20 -1.4 352,793 + MPMX19_03084 0.20 -0.6 352,793 + MPMX19_03084 0.20 +0.0 352,793 + MPMX19_03084 0.20 -0.7 352,793 + MPMX19_03084 0.20 -2.0 352,793 + MPMX19_03084 0.20 -0.2 352,793 + MPMX19_03084 0.20 +0.0 352,793 + MPMX19_03084 0.20 -0.4 352,793 + MPMX19_03084 0.20 +0.3 352,793 + MPMX19_03084 0.20 -0.3 352,793 + MPMX19_03084 0.20 -1.2 352,794 - MPMX19_03084 0.20 +0.8 352,794 - MPMX19_03084 0.20 +0.0 352,794 - MPMX19_03084 0.20 -1.9 352,794 - MPMX19_03084 0.20 -0.2 352,794 - MPMX19_03084 0.20 -1.6 352,794 - MPMX19_03084 0.20 -0.1 353,304 - MPMX19_03084 0.43 -2.1 353,411 + MPMX19_03084 0.48 -0.2 353,412 - MPMX19_03084 0.48 -1.2 353,412 - MPMX19_03084 0.48 +1.6 353,891 + MPMX19_03084 0.69 -1.1 353,891 + MPMX19_03084 0.69 +1.0 353,891 + MPMX19_03084 0.69 +0.4 353,891 + MPMX19_03084 0.69 +0.6 353,891 + MPMX19_03084 0.69 +1.0 353,891 + MPMX19_03084 0.69 +0.7 353,891 + MPMX19_03084 0.69 -0.3 353,891 + MPMX19_03084 0.69 -0.2 353,891 + MPMX19_03084 0.69 -0.3 353,891 + MPMX19_03084 0.69 -1.4 353,892 - MPMX19_03084 0.69 +0.0 353,892 - MPMX19_03084 0.69 -0.3 353,892 - MPMX19_03084 0.69 +1.4 353,892 - MPMX19_03084 0.69 +0.5 353,892 - MPMX19_03084 0.69 +1.4 353,892 - MPMX19_03084 0.69 +0.6 353,948 + MPMX19_03084 0.72 +0.3 354,113 + MPMX19_03084 0.79 -0.4 354,113 + MPMX19_03084 0.79 -1.2 354,114 - MPMX19_03084 0.79 +0.4 354,114 - MPMX19_03084 0.79 +0.8 354,114 - MPMX19_03084 0.79 -1.2 354,239 + MPMX19_03084 0.85 -1.2 354,239 + MPMX19_03084 0.85 -0.7 354,240 - MPMX19_03084 0.85 +0.0 354,240 - MPMX19_03084 0.85 -1.1 354,284 + MPMX19_03084 0.87 -0.9 354,285 - MPMX19_03084 0.87 -0.9 354,387 - +0.0 354,387 - +0.4 354,696 + +0.6 354,696 + +0.0 354,696 + +0.2 354,697 - +0.1 354,697 - -1.6 354,697 - +0.0 354,697 - +1.4 354,697 - +0.1 354,733 + -0.4 354,733 + -0.1 354,733 + +0.4 354,734 - +1.0 355,021 + MPMX19_03085 0.36 +1.0 355,021 + MPMX19_03085 0.36 -1.0 355,022 - MPMX19_03085 0.36 +0.1 355,022 - MPMX19_03085 0.36 -0.7 355,022 - MPMX19_03085 0.36 +0.6 355,022 - MPMX19_03085 0.36 -0.2
Or see this region's nucleotide sequence