Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03044 and MPMX19_03045 are separated by 275 nucleotides MPMX19_03045 and MPMX19_03046 are separated by 35 nucleotides MPMX19_03046 and MPMX19_03047 are separated by 173 nucleotides
MPMX19_03044: MPMX19_03044 - hypothetical protein, at 309,980 to 310,693
_03044
MPMX19_03045: MPMX19_03045 - hypothetical protein, at 310,969 to 311,631
_03045
MPMX19_03046: MPMX19_03046 - hypothetical protein, at 311,667 to 311,819
_03046
MPMX19_03047: MPMX19_03047 - hypothetical protein, at 311,993 to 312,133
_03047
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 310.065 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.190 kb on + strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.191 kb on - strand, within MPMX19_03044 at 310.482 kb on + strand, within MPMX19_03044 at 310.482 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.485 kb on + strand, within MPMX19_03044 at 310.733 kb on + strand at 310.736 kb on - strand at 310.760 kb on + strand at 310.760 kb on + strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.761 kb on - strand at 310.856 kb on - strand at 310.897 kb on - strand at 311.000 kb on + strand at 311.000 kb on + strand at 311.001 kb on - strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.002 kb on + strand at 311.003 kb on - strand at 311.101 kb on + strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.102 kb on - strand, within MPMX19_03045 at 311.273 kb on + strand, within MPMX19_03045 at 311.377 kb on - strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.401 kb on + strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.402 kb on - strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.542 kb on + strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.543 kb on - strand, within MPMX19_03045 at 311.593 kb on - strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.594 kb on + strand at 311.595 kb on - strand at 311.629 kb on + strand at 311.630 kb on - strand at 311.630 kb on - strand at 311.994 kb on + strand at 311.994 kb on + strand at 311.995 kb on - strand at 311.995 kb on - strand at 312.129 kb on + strand at 312.129 kb on + strand at 312.129 kb on + strand at 312.130 kb on - strand at 312.151 kb on + strand at 312.152 kb on - strand at 312.292 kb on - strand at 312.301 kb on + strand at 312.301 kb on + strand at 312.301 kb on + strand at 312.302 kb on - strand at 312.331 kb on + strand at 312.331 kb on + strand at 312.331 kb on + strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.332 kb on - strand at 312.362 kb on - strand at 312.533 kb on + strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand at 312.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 310,065 + MPMX19_03044 0.12 -1.2 310,190 + MPMX19_03044 0.29 +0.0 310,190 + MPMX19_03044 0.29 -1.8 310,190 + MPMX19_03044 0.29 -1.2 310,191 - MPMX19_03044 0.30 -0.4 310,191 - MPMX19_03044 0.30 -0.9 310,191 - MPMX19_03044 0.30 -0.5 310,191 - MPMX19_03044 0.30 +1.2 310,191 - MPMX19_03044 0.30 -0.2 310,482 + MPMX19_03044 0.70 -0.5 310,482 + MPMX19_03044 0.70 -1.6 310,485 + MPMX19_03044 0.71 -2.9 310,485 + MPMX19_03044 0.71 -0.6 310,485 + MPMX19_03044 0.71 -0.2 310,485 + MPMX19_03044 0.71 -0.2 310,733 + +1.0 310,736 - -0.3 310,760 + +0.2 310,760 + +0.2 310,761 - -0.6 310,761 - -0.6 310,761 - +1.2 310,761 - +0.1 310,856 - -0.9 310,897 - -2.1 311,000 + +0.1 311,000 + -1.2 311,001 - -0.9 311,002 + +0.8 311,002 + +1.2 311,002 + +0.4 311,002 + -0.4 311,002 + +0.4 311,002 + +0.4 311,002 + -0.7 311,002 + +0.9 311,002 + +0.6 311,002 + -2.1 311,003 - +0.7 311,101 + MPMX19_03045 0.20 -0.3 311,102 - MPMX19_03045 0.20 -0.5 311,102 - MPMX19_03045 0.20 +1.0 311,102 - MPMX19_03045 0.20 -0.9 311,273 + MPMX19_03045 0.46 -1.2 311,377 - MPMX19_03045 0.62 +0.2 311,401 + MPMX19_03045 0.65 -1.0 311,401 + MPMX19_03045 0.65 +0.4 311,401 + MPMX19_03045 0.65 -1.4 311,401 + MPMX19_03045 0.65 -1.0 311,401 + MPMX19_03045 0.65 +1.1 311,401 + MPMX19_03045 0.65 -0.6 311,401 + MPMX19_03045 0.65 -1.4 311,402 - MPMX19_03045 0.65 +0.3 311,402 - MPMX19_03045 0.65 -1.1 311,402 - MPMX19_03045 0.65 +0.5 311,402 - MPMX19_03045 0.65 +2.8 311,542 + MPMX19_03045 0.86 -0.9 311,542 + MPMX19_03045 0.86 -1.4 311,542 + MPMX19_03045 0.86 -1.1 311,542 + MPMX19_03045 0.86 -1.2 311,542 + MPMX19_03045 0.86 +0.8 311,543 - MPMX19_03045 0.87 -0.5 311,543 - MPMX19_03045 0.87 -0.4 311,543 - MPMX19_03045 0.87 -0.7 311,543 - MPMX19_03045 0.87 -0.9 311,543 - MPMX19_03045 0.87 -1.3 311,593 - -0.6 311,594 + -2.3 311,594 + -0.6 311,594 + +0.4 311,594 + -2.3 311,594 + -1.5 311,594 + -0.9 311,594 + -0.9 311,595 - -1.4 311,629 + -2.1 311,630 - -0.7 311,630 - -0.3 311,994 + -0.8 311,994 + -0.4 311,995 - +0.6 311,995 - -0.9 312,129 + -0.7 312,129 + -0.4 312,129 + +0.9 312,130 - +1.1 312,151 + +0.1 312,152 - -0.4 312,292 - -0.3 312,301 + -1.7 312,301 + -0.6 312,301 + -1.1 312,302 - -1.4 312,331 + -0.0 312,331 + +0.4 312,331 + -1.5 312,332 - -1.0 312,332 - +0.8 312,332 - -0.7 312,332 - -0.4 312,332 - +0.0 312,362 - -1.6 312,533 + +2.3 312,534 - -0.3 312,534 - +0.3 312,534 - +0.3 312,534 - +0.4 312,534 - -0.5
Or see this region's nucleotide sequence