Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02962 and MPMX19_02963 are separated by 246 nucleotides MPMX19_02963 and MPMX19_02964 overlap by 1 nucleotides MPMX19_02964 and MPMX19_02965 are separated by 30 nucleotides MPMX19_02965 and MPMX19_02966 are separated by 249 nucleotides
MPMX19_02962: MPMX19_02962 - hypothetical protein, at 223,362 to 224,165
_02962
MPMX19_02963: MPMX19_02963 - hypothetical protein, at 224,412 to 224,672
_02963
MPMX19_02964: MPMX19_02964 - hypothetical protein, at 224,672 to 224,851
_02964
MPMX19_02965: MPMX19_02965 - hypothetical protein, at 224,882 to 225,073
_02965
MPMX19_02966: MPMX19_02966 - Carboxylesterase NlhH, at 225,323 to 226,096
_02966
Position (kb) 224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 223.885 kb on - strand, within MPMX19_02962 at 223.959 kb on + strand, within MPMX19_02962 at 224.013 kb on + strand, within MPMX19_02962 at 224.013 kb on + strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.055 kb on + strand, within MPMX19_02962 at 224.056 kb on - strand, within MPMX19_02962 at 224.056 kb on - strand, within MPMX19_02962 at 224.135 kb on + strand at 224.136 kb on - strand at 224.177 kb on - strand at 224.185 kb on + strand at 224.185 kb on + strand at 224.185 kb on + strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.187 kb on + strand at 224.187 kb on + strand at 224.187 kb on + strand at 224.188 kb on - strand at 224.188 kb on - strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.204 kb on + strand at 224.204 kb on + strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.280 kb on - strand at 224.280 kb on - strand at 224.330 kb on - strand at 224.330 kb on - strand at 224.371 kb on - strand at 224.371 kb on - strand at 224.444 kb on + strand, within MPMX19_02963 at 224.488 kb on + strand, within MPMX19_02963 at 224.489 kb on - strand, within MPMX19_02963 at 224.489 kb on - strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.509 kb on - strand, within MPMX19_02963 at 224.509 kb on - strand, within MPMX19_02963 at 224.635 kb on + strand, within MPMX19_02963 at 224.636 kb on - strand, within MPMX19_02963 at 224.788 kb on - strand, within MPMX19_02964 at 224.852 kb on - strand at 224.873 kb on - strand at 224.873 kb on - strand at 224.873 kb on - strand at 224.942 kb on - strand, within MPMX19_02965 at 224.942 kb on - strand, within MPMX19_02965 at 224.962 kb on + strand, within MPMX19_02965 at 224.963 kb on - strand, within MPMX19_02965 at 224.963 kb on - strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 225.067 kb on - strand at 225.092 kb on + strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.170 kb on - strand at 225.198 kb on - strand at 225.252 kb on + strand at 225.252 kb on + strand at 225.253 kb on - strand at 225.253 kb on - strand at 225.253 kb on - strand at 225.258 kb on - strand at 225.276 kb on + strand at 225.276 kb on + strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.419 kb on + strand, within MPMX19_02966 at 225.419 kb on + strand, within MPMX19_02966 at 225.419 kb on + strand, within MPMX19_02966 at 225.419 kb on + strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.521 kb on + strand, within MPMX19_02966 at 225.794 kb on + strand, within MPMX19_02966 at 225.803 kb on + strand, within MPMX19_02966 at 225.803 kb on + strand, within MPMX19_02966 at 225.804 kb on - strand, within MPMX19_02966 at 225.804 kb on - strand, within MPMX19_02966 at 225.836 kb on + strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.932 kb on + strand, within MPMX19_02966 at 225.932 kb on + strand, within MPMX19_02966 at 225.932 kb on + strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 223,885 - MPMX19_02962 0.65 -0.1 223,959 + MPMX19_02962 0.74 -0.0 224,013 + MPMX19_02962 0.81 -0.4 224,013 + MPMX19_02962 0.81 -0.3 224,014 - MPMX19_02962 0.81 +0.4 224,014 - MPMX19_02962 0.81 -1.4 224,014 - MPMX19_02962 0.81 -0.1 224,014 - MPMX19_02962 0.81 -0.8 224,055 + MPMX19_02962 0.86 -0.2 224,056 - MPMX19_02962 0.86 -1.9 224,056 - MPMX19_02962 0.86 -1.5 224,135 + +1.4 224,136 - -0.7 224,177 - -0.2 224,185 + -1.0 224,185 + -2.1 224,185 + -0.2 224,186 - +0.6 224,186 - -0.4 224,186 - +0.3 224,186 - -0.2 224,187 + -0.0 224,187 + -1.8 224,187 + +0.7 224,188 - +0.6 224,188 - -1.6 224,201 - -0.2 224,201 - -0.4 224,201 - -1.8 224,204 + -1.3 224,204 + +2.0 224,205 - +0.8 224,205 - +0.4 224,205 - -0.3 224,205 - +0.2 224,279 + +0.3 224,279 + -1.5 224,279 + -0.8 224,279 + -0.6 224,280 - +0.4 224,280 - -0.1 224,330 - -0.9 224,330 - -0.0 224,371 - -0.5 224,371 - -0.2 224,444 + MPMX19_02963 0.12 -0.4 224,488 + MPMX19_02963 0.29 -0.4 224,489 - MPMX19_02963 0.30 -0.0 224,489 - MPMX19_02963 0.30 -0.4 224,506 + MPMX19_02963 0.36 +0.2 224,506 + MPMX19_02963 0.36 -2.8 224,506 + MPMX19_02963 0.36 -0.0 224,506 + MPMX19_02963 0.36 -1.0 224,506 + MPMX19_02963 0.36 -1.0 224,506 + MPMX19_02963 0.36 +1.0 224,506 + MPMX19_02963 0.36 -0.4 224,506 + MPMX19_02963 0.36 -1.8 224,506 + MPMX19_02963 0.36 +0.6 224,506 + MPMX19_02963 0.36 +0.1 224,506 + MPMX19_02963 0.36 -2.2 224,506 + MPMX19_02963 0.36 +1.6 224,506 + MPMX19_02963 0.36 +0.2 224,506 + MPMX19_02963 0.36 -0.3 224,506 + MPMX19_02963 0.36 +1.6 224,506 + MPMX19_02963 0.36 -0.4 224,507 - MPMX19_02963 0.36 -0.4 224,507 - MPMX19_02963 0.36 -0.0 224,507 - MPMX19_02963 0.36 -0.1 224,507 - MPMX19_02963 0.36 -1.0 224,507 - MPMX19_02963 0.36 +0.6 224,507 - MPMX19_02963 0.36 +0.7 224,507 - MPMX19_02963 0.36 -1.4 224,507 - MPMX19_02963 0.36 -0.1 224,507 - MPMX19_02963 0.36 -1.2 224,507 - MPMX19_02963 0.36 -0.5 224,508 + MPMX19_02963 0.37 +0.6 224,508 + MPMX19_02963 0.37 -0.2 224,508 + MPMX19_02963 0.37 -1.4 224,509 - MPMX19_02963 0.37 -0.9 224,509 - MPMX19_02963 0.37 -1.0 224,635 + MPMX19_02963 0.85 +1.1 224,636 - MPMX19_02963 0.86 -1.0 224,788 - MPMX19_02964 0.64 -1.9 224,852 - -1.1 224,873 - +0.6 224,873 - -0.2 224,873 - +0.8 224,942 - MPMX19_02965 0.31 -1.0 224,942 - MPMX19_02965 0.31 -1.1 224,962 + MPMX19_02965 0.42 -0.8 224,963 - MPMX19_02965 0.42 -1.8 224,963 - MPMX19_02965 0.42 -0.2 224,964 + MPMX19_02965 0.43 -0.2 224,964 + MPMX19_02965 0.43 -1.0 224,964 + MPMX19_02965 0.43 -0.2 224,965 - MPMX19_02965 0.43 -1.6 224,965 - MPMX19_02965 0.43 -0.6 224,965 - MPMX19_02965 0.43 +0.3 224,965 - MPMX19_02965 0.43 -1.7 224,965 - MPMX19_02965 0.43 -0.6 225,067 - -0.8 225,092 + +0.2 225,093 - -0.7 225,093 - +0.9 225,093 - -0.3 225,093 - -0.3 225,093 - -0.1 225,110 + -1.1 225,110 + +0.2 225,110 + -0.0 225,110 + -1.6 225,110 + -1.0 225,110 + +0.1 225,110 + +0.3 225,110 + -1.6 225,110 + -0.4 225,110 + -1.0 225,110 + +0.9 225,110 + +0.2 225,110 + -1.9 225,110 + -1.0 225,111 - -1.8 225,111 - -0.5 225,111 - +0.8 225,111 - +0.3 225,111 - -0.2 225,111 - +0.6 225,111 - -0.2 225,111 - +0.8 225,112 + -1.6 225,112 + -0.4 225,112 + -0.8 225,112 + -2.5 225,112 + -1.0 225,112 + -1.4 225,112 + -0.4 225,112 + +0.7 225,112 + -0.1 225,112 + -1.0 225,112 + -1.8 225,112 + -0.9 225,112 + -0.9 225,112 + -0.5 225,112 + +2.0 225,112 + +0.6 225,112 + -1.5 225,113 - +0.9 225,113 - -0.8 225,113 - +0.3 225,113 - +0.7 225,113 - -1.5 225,113 - -0.3 225,113 - -0.6 225,113 - -0.7 225,113 - +0.8 225,113 - -1.5 225,170 - +2.6 225,198 - +0.4 225,252 + +0.8 225,252 + +1.3 225,253 - -0.7 225,253 - -0.9 225,253 - -0.2 225,258 - -0.4 225,276 + -0.3 225,276 + -0.3 225,277 - -1.3 225,277 - +0.0 225,277 - -1.2 225,277 - -1.0 225,277 - +0.2 225,277 - +1.2 225,277 - +0.3 225,419 + MPMX19_02966 0.12 -1.0 225,419 + MPMX19_02966 0.12 -1.2 225,419 + MPMX19_02966 0.12 +0.2 225,419 + MPMX19_02966 0.12 +0.6 225,420 - MPMX19_02966 0.13 -2.2 225,420 - MPMX19_02966 0.13 -1.8 225,420 - MPMX19_02966 0.13 +0.7 225,420 - MPMX19_02966 0.13 -1.1 225,420 - MPMX19_02966 0.13 +0.9 225,521 + MPMX19_02966 0.26 -0.5 225,794 + MPMX19_02966 0.61 -0.9 225,803 + MPMX19_02966 0.62 +0.9 225,803 + MPMX19_02966 0.62 -1.2 225,804 - MPMX19_02966 0.62 -1.8 225,804 - MPMX19_02966 0.62 -0.4 225,836 + MPMX19_02966 0.66 +0.1 225,837 - MPMX19_02966 0.66 +0.4 225,837 - MPMX19_02966 0.66 +0.1 225,837 - MPMX19_02966 0.66 -1.2 225,837 - MPMX19_02966 0.66 -0.5 225,837 - MPMX19_02966 0.66 -0.3 225,932 + MPMX19_02966 0.79 -0.1 225,932 + MPMX19_02966 0.79 -0.4 225,932 + MPMX19_02966 0.79 -0.6 225,933 - MPMX19_02966 0.79 -1.2 225,933 - MPMX19_02966 0.79 -1.4 225,933 - MPMX19_02966 0.79 +1.1 225,933 - MPMX19_02966 0.79 -1.0 225,933 - MPMX19_02966 0.79 -2.3
Or see this region's nucleotide sequence