Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02007

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02006 and MPMX19_02007 are separated by 47 nucleotidesMPMX19_02007 and MPMX19_02008 are separated by 141 nucleotidesMPMX19_02008 and MPMX19_02009 overlap by 4 nucleotides MPMX19_02006: MPMX19_02006 - Methionyl-tRNA formyltransferase, at 2,094,827 to 2,095,783 _02006 MPMX19_02007: MPMX19_02007 - Peptide deformylase 1, at 2,095,831 to 2,096,343 _02007 MPMX19_02008: MPMX19_02008 - Adenosylcobinamide-GDP ribazoletransferase, at 2,096,485 to 2,097,321 _02008 MPMX19_02009: MPMX19_02009 - Adenosylcobalamin/alpha-ribazole phosphatase, at 2,097,318 to 2,097,962 _02009 Position (kb) 2095 2096 2097Strain fitness (log2 ratio) -1 0 1at 2095.793 kb on - strandat 2095.793 kb on - strandat 2095.793 kb on - strandat 2096.361 kb on - strandat 2096.386 kb on - strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.421 kb on + strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.422 kb on - strandat 2096.479 kb on + strandat 2096.479 kb on + strandat 2096.479 kb on + strandat 2096.479 kb on + strandat 2096.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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2,095,793 - -0.3
2,095,793 - -0.2
2,095,793 - -0.6
2,096,361 - -0.0
2,096,386 - -1.1
2,096,421 + -0.1
2,096,421 + -1.6
2,096,421 + -0.2
2,096,421 + -0.8
2,096,421 + -0.4
2,096,421 + -0.7
2,096,421 + -0.9
2,096,422 - +0.4
2,096,422 - +0.2
2,096,422 - +0.1
2,096,422 - -0.4
2,096,422 - -0.9
2,096,422 - -0.0
2,096,422 - -0.6
2,096,422 - -1.2
2,096,422 - +1.2
2,096,422 - +1.1
2,096,479 + -1.0
2,096,479 + -0.9
2,096,479 + +1.1
2,096,479 + +0.1
2,096,479 + -0.8

Or see this region's nucleotide sequence