Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00877

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00876 and MPMX19_00877 are separated by 78 nucleotidesMPMX19_00877 and MPMX19_00878 are separated by 237 nucleotidesMPMX19_00878 and MPMX19_00879 are separated by 18 nucleotides MPMX19_00876: MPMX19_00876 - Transcription-repair-coupling factor, at 908,670 to 912,311 _00876 MPMX19_00877: MPMX19_00877 - hypothetical protein, at 912,390 to 912,713 _00877 MPMX19_00878: MPMX19_00878 - Guanidinium exporter, at 912,951 to 913,268 _00878 MPMX19_00879: MPMX19_00879 - hypothetical protein, at 913,287 to 913,826 _00879 Position (kb) 912 913Strain fitness (log2 ratio) -2 -1 0 1at 911.464 kb on + strand, within MPMX19_00876at 911.464 kb on + strand, within MPMX19_00876at 911.464 kb on + strand, within MPMX19_00876at 911.464 kb on + strand, within MPMX19_00876at 911.464 kb on + strand, within MPMX19_00876at 911.464 kb on + strand, within MPMX19_00876at 911.465 kb on - strand, within MPMX19_00876at 911.465 kb on - strand, within MPMX19_00876at 911.465 kb on - strand, within MPMX19_00876at 911.465 kb on - strand, within MPMX19_00876at 911.465 kb on - strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.524 kb on + strand, within MPMX19_00876at 911.525 kb on - strand, within MPMX19_00876at 911.525 kb on - strand, within MPMX19_00876at 911.525 kb on - strand, within MPMX19_00876at 911.551 kb on + strand, within MPMX19_00876at 911.551 kb on + strand, within MPMX19_00876at 911.551 kb on + strand, within MPMX19_00876at 911.551 kb on + strand, within MPMX19_00876at 911.552 kb on - strand, within MPMX19_00876at 911.552 kb on - strand, within MPMX19_00876at 911.552 kb on - strand, within MPMX19_00876at 911.552 kb on - strand, within MPMX19_00876at 911.552 kb on - strand, within MPMX19_00876at 911.552 kb on - strand, within MPMX19_00876at 911.552 kb on - strand, within MPMX19_00876at 911.836 kb on + strand, within MPMX19_00876at 911.836 kb on + strand, within MPMX19_00876at 911.836 kb on + strand, within MPMX19_00876at 911.836 kb on + strand, within MPMX19_00876at 911.836 kb on + strand, within MPMX19_00876at 911.837 kb on - strand, within MPMX19_00876at 911.837 kb on - strand, within MPMX19_00876at 911.837 kb on - strand, within MPMX19_00876at 911.854 kb on + strand, within MPMX19_00876at 912.082 kb on + strandat 912.082 kb on + strandat 912.083 kb on - strandat 912.199 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.412 kb on + strandat 912.413 kb on - strandat 912.413 kb on - strandat 912.413 kb on - strandat 912.413 kb on - strandat 912.859 kb on + strandat 912.859 kb on + strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.860 kb on - strandat 912.944 kb on + strandat 912.944 kb on + strandat 912.945 kb on - strandat 913.014 kb on + strand, within MPMX19_00878at 913.014 kb on + strand, within MPMX19_00878at 913.014 kb on + strand, within MPMX19_00878at 913.014 kb on + strand, within MPMX19_00878at 913.015 kb on - strand, within MPMX19_00878at 913.015 kb on - strand, within MPMX19_00878at 913.125 kb on + strand, within MPMX19_00878at 913.125 kb on + strand, within MPMX19_00878at 913.125 kb on + strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.126 kb on - strand, within MPMX19_00878at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.399 kb on + strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879at 913.400 kb on - strand, within MPMX19_00879

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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911,464 + MPMX19_00876 0.77 -1.3
911,464 + MPMX19_00876 0.77 -0.4
911,464 + MPMX19_00876 0.77 -0.1
911,464 + MPMX19_00876 0.77 +0.8
911,464 + MPMX19_00876 0.77 +0.2
911,464 + MPMX19_00876 0.77 -2.1
911,465 - MPMX19_00876 0.77 -0.9
911,465 - MPMX19_00876 0.77 +0.7
911,465 - MPMX19_00876 0.77 +0.6
911,465 - MPMX19_00876 0.77 -0.8
911,465 - MPMX19_00876 0.77 -0.1
911,524 + MPMX19_00876 0.78 -1.3
911,524 + MPMX19_00876 0.78 -1.0
911,524 + MPMX19_00876 0.78 -2.1
911,524 + MPMX19_00876 0.78 -0.1
911,524 + MPMX19_00876 0.78 -0.4
911,524 + MPMX19_00876 0.78 -1.8
911,524 + MPMX19_00876 0.78 +0.5
911,524 + MPMX19_00876 0.78 +1.1
911,525 - MPMX19_00876 0.78 -0.1
911,525 - MPMX19_00876 0.78 -1.7
911,525 - MPMX19_00876 0.78 -1.5
911,551 + MPMX19_00876 0.79 -1.0
911,551 + MPMX19_00876 0.79 +0.6
911,551 + MPMX19_00876 0.79 +1.5
911,551 + MPMX19_00876 0.79 +0.4
911,552 - MPMX19_00876 0.79 +0.0
911,552 - MPMX19_00876 0.79 +0.6
911,552 - MPMX19_00876 0.79 +0.6
911,552 - MPMX19_00876 0.79 +0.0
911,552 - MPMX19_00876 0.79 +0.0
911,552 - MPMX19_00876 0.79 +0.5
911,552 - MPMX19_00876 0.79 -1.3
911,836 + MPMX19_00876 0.87 +0.7
911,836 + MPMX19_00876 0.87 -0.5
911,836 + MPMX19_00876 0.87 +0.5
911,836 + MPMX19_00876 0.87 +0.1
911,836 + MPMX19_00876 0.87 +0.5
911,837 - MPMX19_00876 0.87 +0.8
911,837 - MPMX19_00876 0.87 +0.5
911,837 - MPMX19_00876 0.87 +0.5
911,854 + MPMX19_00876 0.87 -1.4
912,082 + -1.1
912,082 + +0.7
912,083 - +1.0
912,199 + -0.7
912,301 + +0.3
912,301 + +0.5
912,301 + +0.3
912,301 + +0.1
912,301 + -0.8
912,301 + -0.2
912,301 + -1.0
912,301 + -1.0
912,301 + +0.5
912,301 + -0.4
912,301 + -1.0
912,301 + -0.8
912,302 - -0.7
912,302 - +0.7
912,302 - -0.0
912,302 - +1.1
912,302 - +0.9
912,302 - +0.9
912,302 - -1.3
912,412 + -1.1
912,413 - +1.3
912,413 - +0.5
912,413 - -0.4
912,413 - -0.3
912,859 + +0.9
912,859 + -0.8
912,860 - -0.7
912,860 - -0.3
912,860 - +0.2
912,860 - +0.3
912,860 - -0.1
912,860 - +1.5
912,944 + -1.8
912,944 + -0.8
912,945 - -2.0
913,014 + MPMX19_00878 0.20 -0.1
913,014 + MPMX19_00878 0.20 -0.1
913,014 + MPMX19_00878 0.20 +0.8
913,014 + MPMX19_00878 0.20 -1.5
913,015 - MPMX19_00878 0.20 -0.1
913,015 - MPMX19_00878 0.20 -1.3
913,125 + MPMX19_00878 0.55 -0.4
913,125 + MPMX19_00878 0.55 -0.5
913,125 + MPMX19_00878 0.55 -0.5
913,126 - MPMX19_00878 0.55 +0.6
913,126 - MPMX19_00878 0.55 +0.5
913,126 - MPMX19_00878 0.55 -0.8
913,126 - MPMX19_00878 0.55 -0.8
913,126 - MPMX19_00878 0.55 -0.0
913,399 + MPMX19_00879 0.21 -0.1
913,399 + MPMX19_00879 0.21 +0.8
913,399 + MPMX19_00879 0.21 +0.1
913,399 + MPMX19_00879 0.21 +0.4
913,399 + MPMX19_00879 0.21 -1.5
913,399 + MPMX19_00879 0.21 +0.7
913,399 + MPMX19_00879 0.21 -1.1
913,399 + MPMX19_00879 0.21 +0.4
913,399 + MPMX19_00879 0.21 -1.0
913,399 + MPMX19_00879 0.21 -0.8
913,399 + MPMX19_00879 0.21 +0.2
913,399 + MPMX19_00879 0.21 -0.1
913,399 + MPMX19_00879 0.21 -0.1
913,399 + MPMX19_00879 0.21 -1.3
913,399 + MPMX19_00879 0.21 -1.2
913,399 + MPMX19_00879 0.21 +0.1
913,399 + MPMX19_00879 0.21 -1.1
913,400 - MPMX19_00879 0.21 +0.1
913,400 - MPMX19_00879 0.21 -0.8
913,400 - MPMX19_00879 0.21 -0.2
913,400 - MPMX19_00879 0.21 -0.5
913,400 - MPMX19_00879 0.21 +1.5
913,400 - MPMX19_00879 0.21 -0.1
913,400 - MPMX19_00879 0.21 -1.1
913,400 - MPMX19_00879 0.21 +0.5
913,400 - MPMX19_00879 0.21 +0.7
913,400 - MPMX19_00879 0.21 +0.7
913,400 - MPMX19_00879 0.21 +0.2
913,400 - MPMX19_00879 0.21 -2.4

Or see this region's nucleotide sequence