Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00744 and MPMX19_00745 are separated by 94 nucleotides MPMX19_00745 and MPMX19_00746 are separated by 219 nucleotides MPMX19_00746 and MPMX19_00747 are separated by 260 nucleotides MPMX19_00747 and MPMX19_00748 are separated by 141 nucleotides MPMX19_00748 and MPMX19_00749 are separated by 72 nucleotides
MPMX19_00744: MPMX19_00744 - hypothetical protein, at 763,578 to 764,054
_00744
MPMX19_00745: MPMX19_00745 - tRNA-Pro, at 764,149 to 764,225
_00745
MPMX19_00746: MPMX19_00746 - hypothetical protein, at 764,445 to 764,675
_00746
MPMX19_00747: MPMX19_00747 - Organic hydroperoxide resistance protein OhrB, at 764,936 to 765,355
_00747
MPMX19_00748: MPMX19_00748 - Organic hydroperoxide resistance transcriptional regulator, at 765,497 to 765,955
_00748
MPMX19_00749: MPMX19_00749 - hypothetical protein, at 766,028 to 766,630
_00749
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.311 kb on - strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.815 kb on + strand at 764.816 kb on - strand at 764.816 kb on - strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 765.093 kb on - strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748 at 765.953 kb on + strand at 765.954 kb on - strand at 765.954 kb on - strand at 765.954 kb on - strand at 765.954 kb on - strand at 766.278 kb on - strand, within MPMX19_00749 at 766.278 kb on - strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.340 kb on - strand, within MPMX19_00749
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 764,310 + +0.0 764,310 + -0.5 764,310 + +0.2 764,310 + -1.1 764,310 + +0.3 764,311 - -1.9 764,321 + -2.0 764,321 + +1.3 764,321 + -0.9 764,321 + +0.9 764,321 + -0.8 764,321 + -0.3 764,321 + -0.4 764,321 + +1.1 764,321 + +0.5 764,321 + -0.1 764,321 + +1.1 764,321 + +0.4 764,321 + -1.3 764,321 + -0.7 764,321 + -0.1 764,321 + +0.5 764,321 + +0.1 764,321 + -0.8 764,321 + -0.4 764,322 - -0.1 764,322 - -0.8 764,322 - -0.5 764,322 - -1.5 764,322 - -0.6 764,322 - -0.2 764,322 - -1.5 764,322 - -2.3 764,322 - +0.6 764,517 + MPMX19_00746 0.31 +0.7 764,517 + MPMX19_00746 0.31 -0.7 764,517 + MPMX19_00746 0.31 -0.4 764,517 + MPMX19_00746 0.31 +0.3 764,517 + MPMX19_00746 0.31 -0.9 764,518 - MPMX19_00746 0.32 -0.3 764,518 - MPMX19_00746 0.32 +0.5 764,518 - MPMX19_00746 0.32 -0.3 764,518 - MPMX19_00746 0.32 +0.0 764,518 - MPMX19_00746 0.32 -0.1 764,518 - MPMX19_00746 0.32 -0.9 764,758 + +0.5 764,758 + -1.7 764,758 + +0.8 764,758 + -0.9 764,758 + -0.5 764,758 + -1.3 764,758 + +0.8 764,758 + -1.1 764,758 + +1.0 764,758 + -0.8 764,758 + +0.0 764,758 + -0.2 764,758 + +0.3 764,758 + +0.8 764,758 + -1.3 764,758 + -1.3 764,758 + +0.6 764,758 + +0.7 764,758 + +1.8 764,758 + +0.2 764,759 - +0.5 764,759 - -0.0 764,759 - +0.3 764,759 - +0.3 764,759 - -1.3 764,759 - +1.1 764,759 - +0.1 764,759 - +0.3 764,759 - -1.1 764,759 - -1.7 764,759 - +0.6 764,759 - -0.2 764,759 - -0.4 764,759 - +1.0 764,759 - +0.2 764,759 - -0.2 764,759 - +1.0 764,759 - +1.9 764,759 - -1.7 764,759 - -1.3 764,760 + +0.0 764,760 + -0.5 764,760 + -1.1 764,760 + -1.1 764,760 + -2.9 764,760 + -0.2 764,760 + -0.1 764,760 + -0.0 764,760 + -0.3 764,760 + -1.4 764,760 + -0.8 764,760 + +1.0 764,761 - -0.7 764,761 - +0.0 764,761 - +0.3 764,761 - +0.0 764,761 - -0.1 764,761 - -0.2 764,761 - -0.5 764,761 - +0.1 764,761 - -0.8 764,761 - -0.5 764,761 - -0.9 764,761 - +1.5 764,761 - +2.9 764,761 - +0.0 764,761 - +0.3 764,761 - -0.5 764,761 - -1.7 764,761 - -0.2 764,815 + -1.9 764,816 - -0.1 764,816 - -0.5 764,948 + -0.3 764,948 + -0.1 764,948 + -0.7 764,949 - -0.4 764,949 - -1.9 764,949 - -0.3 764,949 - -0.4 764,949 - -1.2 764,949 - +1.2 765,093 - MPMX19_00747 0.37 -1.8 765,292 + MPMX19_00747 0.85 -1.6 765,292 + MPMX19_00747 0.85 -0.5 765,292 + MPMX19_00747 0.85 +1.0 765,292 + MPMX19_00747 0.85 -1.1 765,293 - MPMX19_00747 0.85 +0.8 765,293 - MPMX19_00747 0.85 -0.3 765,293 - MPMX19_00747 0.85 +0.4 765,293 - MPMX19_00747 0.85 +1.1 765,293 - MPMX19_00747 0.85 -1.8 765,305 + MPMX19_00747 0.88 +0.9 765,305 + MPMX19_00747 0.88 -0.3 765,305 + MPMX19_00747 0.88 -2.4 765,305 + MPMX19_00747 0.88 -0.5 765,305 + MPMX19_00747 0.88 -0.1 765,306 - MPMX19_00747 0.88 +0.2 765,306 - MPMX19_00747 0.88 +0.3 765,306 - MPMX19_00747 0.88 -1.3 765,306 - MPMX19_00747 0.88 +1.1 765,554 + MPMX19_00748 0.12 +0.3 765,554 + MPMX19_00748 0.12 -1.7 765,554 + MPMX19_00748 0.12 -1.5 765,554 + MPMX19_00748 0.12 -1.7 765,554 + MPMX19_00748 0.12 -0.1 765,617 + MPMX19_00748 0.26 +0.3 765,617 + MPMX19_00748 0.26 -0.6 765,617 + MPMX19_00748 0.26 -0.7 765,617 + MPMX19_00748 0.26 -1.6 765,617 + MPMX19_00748 0.26 +0.5 765,617 + MPMX19_00748 0.26 -0.1 765,617 + MPMX19_00748 0.26 +1.0 765,626 + MPMX19_00748 0.28 -0.9 765,626 + MPMX19_00748 0.28 -0.5 765,953 + -1.3 765,954 - +0.8 765,954 - -0.4 765,954 - -0.4 765,954 - -0.6 766,278 - MPMX19_00749 0.41 +0.5 766,278 - MPMX19_00749 0.41 +0.3 766,307 + MPMX19_00749 0.46 -0.4 766,307 + MPMX19_00749 0.46 -1.0 766,307 + MPMX19_00749 0.46 -0.1 766,307 + MPMX19_00749 0.46 -0.1 766,307 + MPMX19_00749 0.46 +0.6 766,307 + MPMX19_00749 0.46 +0.7 766,307 + MPMX19_00749 0.46 +0.4 766,308 - MPMX19_00749 0.46 +0.3 766,308 - MPMX19_00749 0.46 +0.6 766,308 - MPMX19_00749 0.46 -0.1 766,308 - MPMX19_00749 0.46 -0.3 766,308 - MPMX19_00749 0.46 -0.1 766,308 - MPMX19_00749 0.46 -0.1 766,308 - MPMX19_00749 0.46 -1.1 766,308 - MPMX19_00749 0.46 -0.9 766,308 - MPMX19_00749 0.46 +0.4 766,308 - MPMX19_00749 0.46 -0.9 766,308 - MPMX19_00749 0.46 +0.3 766,340 - MPMX19_00749 0.52 -0.2
Or see this region's nucleotide sequence