Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00491

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00489 and MPMX19_00490 are separated by 58 nucleotidesMPMX19_00490 and MPMX19_00491 are separated by 19 nucleotidesMPMX19_00491 and MPMX19_00492 are separated by 119 nucleotides MPMX19_00489: MPMX19_00489 - hypothetical protein, at 489,828 to 490,760 _00489 MPMX19_00490: MPMX19_00490 - hypothetical protein, at 490,819 to 491,505 _00490 MPMX19_00491: MPMX19_00491 - hypothetical protein, at 491,525 to 492,484 _00491 MPMX19_00492: MPMX19_00492 - Cobalamin biosynthesis protein CbiB, at 492,604 to 493,587 _00492 Position (kb) 491 492 493Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 490.583 kb on + strand, within MPMX19_00489at 490.583 kb on + strand, within MPMX19_00489at 490.583 kb on + strand, within MPMX19_00489at 490.583 kb on + strand, within MPMX19_00489at 490.584 kb on - strand, within MPMX19_00489at 490.584 kb on - strand, within MPMX19_00489at 490.584 kb on - strand, within MPMX19_00489at 490.584 kb on - strand, within MPMX19_00489at 490.584 kb on - strand, within MPMX19_00489at 490.656 kb on + strand, within MPMX19_00489at 490.656 kb on + strand, within MPMX19_00489at 490.656 kb on + strand, within MPMX19_00489at 490.656 kb on + strand, within MPMX19_00489at 490.657 kb on - strand, within MPMX19_00489at 490.657 kb on - strand, within MPMX19_00489at 490.657 kb on - strand, within MPMX19_00489at 490.657 kb on - strand, within MPMX19_00489at 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.720 kb on + strandat 490.721 kb on - strandat 490.721 kb on - strandat 490.721 kb on - strandat 490.721 kb on - strandat 490.721 kb on - strandat 491.080 kb on + strand, within MPMX19_00490at 491.080 kb on + strand, within MPMX19_00490at 491.080 kb on + strand, within MPMX19_00490at 491.080 kb on + strand, within MPMX19_00490at 491.080 kb on + strand, within MPMX19_00490at 491.080 kb on + strand, within MPMX19_00490at 491.081 kb on - strand, within MPMX19_00490at 491.081 kb on - strand, within MPMX19_00490at 491.081 kb on - strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.251 kb on + strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.252 kb on - strand, within MPMX19_00490at 491.294 kb on + strand, within MPMX19_00490at 491.294 kb on + strand, within MPMX19_00490at 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.470 kb on + strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.471 kb on - strandat 491.559 kb on + strandat 491.559 kb on + strandat 491.559 kb on + strandat 491.559 kb on + strandat 491.559 kb on + strandat 491.560 kb on - strandat 491.560 kb on - strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.568 kb on + strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.569 kb on - strandat 491.646 kb on + strand, within MPMX19_00491at 491.646 kb on + strand, within MPMX19_00491at 491.646 kb on + strand, within MPMX19_00491at 491.647 kb on - strand, within MPMX19_00491at 491.673 kb on + strand, within MPMX19_00491at 491.674 kb on - strand, within MPMX19_00491at 491.674 kb on - strand, within MPMX19_00491at 491.674 kb on - strand, within MPMX19_00491at 491.674 kb on - strand, within MPMX19_00491at 491.712 kb on + strand, within MPMX19_00491at 491.712 kb on + strand, within MPMX19_00491at 491.712 kb on + strand, within MPMX19_00491at 491.713 kb on - strand, within MPMX19_00491at 491.713 kb on - strand, within MPMX19_00491at 491.713 kb on - strand, within MPMX19_00491at 491.713 kb on - strand, within MPMX19_00491at 491.713 kb on - strand, within MPMX19_00491at 491.850 kb on + strand, within MPMX19_00491at 491.850 kb on + strand, within MPMX19_00491at 491.850 kb on + strand, within MPMX19_00491at 491.850 kb on + strand, within MPMX19_00491at 491.850 kb on + strand, within MPMX19_00491at 491.851 kb on - strand, within MPMX19_00491at 491.851 kb on - strand, within MPMX19_00491at 491.851 kb on - strand, within MPMX19_00491at 491.851 kb on - strand, within MPMX19_00491at 491.851 kb on - strand, within MPMX19_00491at 491.851 kb on - strand, within MPMX19_00491at 491.907 kb on + strand, within MPMX19_00491at 491.907 kb on + strand, within MPMX19_00491at 491.907 kb on + strand, within MPMX19_00491at 491.907 kb on + strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 491.908 kb on - strand, within MPMX19_00491at 492.294 kb on + strand, within MPMX19_00491at 492.294 kb on + strand, within MPMX19_00491at 492.294 kb on + strand, within MPMX19_00491at 492.295 kb on - strand, within MPMX19_00491at 492.295 kb on - strand, within MPMX19_00491at 492.295 kb on - strand, within MPMX19_00491at 492.295 kb on - strand, within MPMX19_00491at 492.295 kb on - strand, within MPMX19_00491at 492.295 kb on - strand, within MPMX19_00491at 492.415 kb on + strandat 492.415 kb on + strandat 492.415 kb on + strandat 492.415 kb on + strandat 492.415 kb on + strandat 492.415 kb on + strandat 492.416 kb on - strandat 492.416 kb on - strandat 492.416 kb on - strandat 492.416 kb on - strandat 492.478 kb on + strandat 492.510 kb on + strandat 492.510 kb on + strandat 492.510 kb on + strandat 492.511 kb on - strandat 492.511 kb on - strandat 492.511 kb on - strandat 492.511 kb on - strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.513 kb on + strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.514 kb on - strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.516 kb on + strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.517 kb on - strandat 492.518 kb on + strandat 492.518 kb on + strandat 492.518 kb on + strandat 492.518 kb on + strandat 492.518 kb on + strandat 492.519 kb on - strandat 492.519 kb on - strandat 492.519 kb on - strandat 492.519 kb on - strandat 492.519 kb on - strandat 492.519 kb on - strandat 493.076 kb on + strand, within MPMX19_00492at 493.077 kb on - strand, within MPMX19_00492at 493.077 kb on - strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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490,583 + MPMX19_00489 0.81 -1.6
490,583 + MPMX19_00489 0.81 +0.8
490,583 + MPMX19_00489 0.81 -0.0
490,583 + MPMX19_00489 0.81 +0.5
490,584 - MPMX19_00489 0.81 -0.4
490,584 - MPMX19_00489 0.81 +0.1
490,584 - MPMX19_00489 0.81 -0.8
490,584 - MPMX19_00489 0.81 -0.0
490,584 - MPMX19_00489 0.81 -0.5
490,656 + MPMX19_00489 0.89 -0.7
490,656 + MPMX19_00489 0.89 +0.2
490,656 + MPMX19_00489 0.89 -0.8
490,656 + MPMX19_00489 0.89 -0.8
490,657 - MPMX19_00489 0.89 -0.3
490,657 - MPMX19_00489 0.89 -0.0
490,657 - MPMX19_00489 0.89 -0.9
490,657 - MPMX19_00489 0.89 -1.8
490,720 + -0.6
490,720 + -1.3
490,720 + -0.7
490,720 + +1.1
490,720 + -1.9
490,720 + +0.0
490,720 + -0.0
490,720 + -0.3
490,720 + +0.8
490,720 + +1.9
490,720 + -0.5
490,720 + -0.2
490,720 + -0.5
490,720 + +0.6
490,720 + +0.1
490,720 + -0.3
490,721 - -0.0
490,721 - -0.8
490,721 - +0.4
490,721 - +1.7
490,721 - -0.3
491,080 + MPMX19_00490 0.38 -0.8
491,080 + MPMX19_00490 0.38 -3.1
491,080 + MPMX19_00490 0.38 +1.4
491,080 + MPMX19_00490 0.38 +0.0
491,080 + MPMX19_00490 0.38 -2.7
491,080 + MPMX19_00490 0.38 -1.1
491,081 - MPMX19_00490 0.38 +0.3
491,081 - MPMX19_00490 0.38 -0.2
491,081 - MPMX19_00490 0.38 +0.2
491,251 + MPMX19_00490 0.63 -0.6
491,251 + MPMX19_00490 0.63 +0.0
491,251 + MPMX19_00490 0.63 -1.1
491,251 + MPMX19_00490 0.63 -0.4
491,251 + MPMX19_00490 0.63 -0.8
491,251 + MPMX19_00490 0.63 -1.0
491,251 + MPMX19_00490 0.63 +0.5
491,251 + MPMX19_00490 0.63 -1.8
491,251 + MPMX19_00490 0.63 +1.2
491,251 + MPMX19_00490 0.63 +0.5
491,252 - MPMX19_00490 0.63 -1.3
491,252 - MPMX19_00490 0.63 +0.3
491,252 - MPMX19_00490 0.63 +0.2
491,252 - MPMX19_00490 0.63 +1.0
491,252 - MPMX19_00490 0.63 -0.2
491,252 - MPMX19_00490 0.63 -1.5
491,252 - MPMX19_00490 0.63 +0.6
491,252 - MPMX19_00490 0.63 +0.3
491,252 - MPMX19_00490 0.63 -1.0
491,294 + MPMX19_00490 0.69 -0.9
491,294 + MPMX19_00490 0.69 +0.0
491,470 + -1.4
491,470 + -0.3
491,470 + +0.7
491,470 + +0.7
491,470 + -0.0
491,470 + -0.8
491,470 + -0.7
491,470 + -1.0
491,470 + -0.4
491,470 + -2.0
491,470 + -0.0
491,470 + +0.2
491,470 + -1.5
491,470 + -0.9
491,471 - +1.4
491,471 - +0.6
491,471 - -1.6
491,471 - +0.0
491,471 - -0.2
491,471 - -0.2
491,471 - +0.3
491,471 - +0.4
491,471 - +0.3
491,471 - -0.5
491,471 - -0.7
491,471 - -0.4
491,471 - +1.4
491,471 - -1.0
491,471 - +0.7
491,471 - +0.7
491,471 - -0.5
491,471 - -0.8
491,471 - -0.6
491,471 - -0.6
491,471 - -1.6
491,471 - +0.0
491,471 - -0.4
491,471 - +1.3
491,471 - -0.7
491,471 - +0.4
491,471 - +0.0
491,471 - +0.2
491,559 + +0.3
491,559 + -0.8
491,559 + -1.0
491,559 + -0.3
491,559 + -0.6
491,560 - +0.3
491,560 - -1.5
491,568 + +0.4
491,568 + -0.8
491,568 + -0.3
491,568 + -0.2
491,568 + -0.6
491,568 + +0.5
491,568 + -0.0
491,568 + -0.5
491,568 + -0.2
491,568 + +1.0
491,568 + -0.5
491,569 - -1.8
491,569 - +0.4
491,569 - -0.3
491,569 - +0.3
491,569 - -0.7
491,569 - -1.5
491,569 - -0.6
491,569 - -0.3
491,569 - +0.3
491,569 - -2.1
491,569 - -0.6
491,569 - -0.2
491,569 - -1.0
491,646 + MPMX19_00491 0.13 -1.8
491,646 + MPMX19_00491 0.13 -1.6
491,646 + MPMX19_00491 0.13 +0.0
491,647 - MPMX19_00491 0.13 -1.0
491,673 + MPMX19_00491 0.15 -1.9
491,674 - MPMX19_00491 0.16 -0.5
491,674 - MPMX19_00491 0.16 -0.2
491,674 - MPMX19_00491 0.16 -0.3
491,674 - MPMX19_00491 0.16 -0.6
491,712 + MPMX19_00491 0.19 +1.5
491,712 + MPMX19_00491 0.19 +1.1
491,712 + MPMX19_00491 0.19 +0.5
491,713 - MPMX19_00491 0.20 -0.5
491,713 - MPMX19_00491 0.20 +0.3
491,713 - MPMX19_00491 0.20 -1.6
491,713 - MPMX19_00491 0.20 +0.4
491,713 - MPMX19_00491 0.20 -0.7
491,850 + MPMX19_00491 0.34 +1.2
491,850 + MPMX19_00491 0.34 -0.8
491,850 + MPMX19_00491 0.34 -0.8
491,850 + MPMX19_00491 0.34 -0.4
491,850 + MPMX19_00491 0.34 -1.6
491,851 - MPMX19_00491 0.34 -1.8
491,851 - MPMX19_00491 0.34 -0.3
491,851 - MPMX19_00491 0.34 -1.8
491,851 - MPMX19_00491 0.34 -1.6
491,851 - MPMX19_00491 0.34 -1.2
491,851 - MPMX19_00491 0.34 -1.8
491,907 + MPMX19_00491 0.40 -0.1
491,907 + MPMX19_00491 0.40 +0.4
491,907 + MPMX19_00491 0.40 -1.5
491,907 + MPMX19_00491 0.40 -1.0
491,908 - MPMX19_00491 0.40 +0.1
491,908 - MPMX19_00491 0.40 -0.8
491,908 - MPMX19_00491 0.40 +0.3
491,908 - MPMX19_00491 0.40 -1.0
491,908 - MPMX19_00491 0.40 -0.0
491,908 - MPMX19_00491 0.40 +0.9
491,908 - MPMX19_00491 0.40 -1.6
491,908 - MPMX19_00491 0.40 +1.0
491,908 - MPMX19_00491 0.40 -0.6
491,908 - MPMX19_00491 0.40 +1.0
492,294 + MPMX19_00491 0.80 -0.4
492,294 + MPMX19_00491 0.80 +0.4
492,294 + MPMX19_00491 0.80 -1.3
492,295 - MPMX19_00491 0.80 +0.7
492,295 - MPMX19_00491 0.80 -1.3
492,295 - MPMX19_00491 0.80 -0.9
492,295 - MPMX19_00491 0.80 -0.2
492,295 - MPMX19_00491 0.80 +0.5
492,295 - MPMX19_00491 0.80 -1.2
492,415 + +0.6
492,415 + +0.1
492,415 + -0.5
492,415 + -0.8
492,415 + -1.8
492,415 + -0.6
492,416 - -0.0
492,416 - +0.4
492,416 - -0.8
492,416 - -2.6
492,478 + +1.0
492,510 + -1.6
492,510 + +1.2
492,510 + +0.6
492,511 - +0.5
492,511 - -1.0
492,511 - -2.0
492,511 - +0.4
492,513 + +0.5
492,513 + +0.1
492,513 + -2.2
492,513 + +0.6
492,513 + -1.0
492,513 + +0.3
492,513 + -0.4
492,513 + -1.9
492,513 + -0.7
492,513 + +1.3
492,513 + +0.2
492,513 + -1.9
492,513 + -0.7
492,513 + -0.0
492,513 + -0.7
492,513 + +0.2
492,514 - -0.7
492,514 - -0.6
492,514 - +0.2
492,514 - -0.8
492,514 - +0.3
492,514 - -1.0
492,514 - -0.2
492,514 - +0.4
492,514 - -1.3
492,514 - -1.4
492,514 - +1.5
492,514 - -0.8
492,514 - -2.2
492,514 - +1.5
492,514 - -1.0
492,514 - -2.0
492,514 - +0.5
492,514 - -1.0
492,514 - +0.2
492,514 - +0.8
492,514 - +0.7
492,514 - -1.2
492,514 - -1.4
492,514 - -0.4
492,516 + -0.8
492,516 + -1.2
492,516 + -1.0
492,516 + -1.4
492,516 + +0.0
492,516 + +0.5
492,516 + -0.0
492,516 + -0.3
492,516 + -0.6
492,516 + -0.5
492,516 + +0.5
492,516 + -0.2
492,516 + +0.4
492,516 + +0.2
492,516 + -0.9
492,516 + +0.1
492,517 - +0.4
492,517 - -1.3
492,517 - +0.1
492,517 - -2.0
492,517 - +1.0
492,517 - +0.3
492,517 - -1.5
492,517 - -1.3
492,517 - -2.2
492,517 - +0.1
492,517 - -0.3
492,517 - -0.4
492,517 - -1.8
492,517 - -0.5
492,517 - -1.4
492,517 - +0.1
492,518 + +0.1
492,518 + -0.0
492,518 + +0.4
492,518 + -0.8
492,518 + -0.3
492,519 - +0.9
492,519 - -0.6
492,519 - +2.5
492,519 - -0.8
492,519 - +1.0
492,519 - +0.9
493,076 + MPMX19_00492 0.48 -0.8
493,077 - MPMX19_00492 0.48 +1.0
493,077 - MPMX19_00492 0.48 +0.1
493,166 + MPMX19_00492 0.57 +0.4
493,166 + MPMX19_00492 0.57 -1.7
493,166 + MPMX19_00492 0.57 -0.0
493,166 + MPMX19_00492 0.57 +1.1
493,166 + MPMX19_00492 0.57 -0.3
493,166 + MPMX19_00492 0.57 -0.0
493,166 + MPMX19_00492 0.57 -0.8
493,167 - MPMX19_00492 0.57 -1.6
493,167 - MPMX19_00492 0.57 +0.2
493,167 - MPMX19_00492 0.57 +0.2
493,167 - MPMX19_00492 0.57 -0.6
493,167 - MPMX19_00492 0.57 +0.3
493,167 - MPMX19_00492 0.57 +0.8

Or see this region's nucleotide sequence