Strain Fitness in Xanthobacter sp. DMC5 around GFF959

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF958 and GFF959 are separated by 133 nucleotidesGFF959 and GFF960 are separated by 237 nucleotides GFF958 - LexA repressor, at 1,034,063 to 1,034,773 GFF958 GFF959 - hypothetical protein, at 1,034,907 to 1,037,081 GFF959 GFF960 - Glutamate--tRNA ligase, at 1,037,319 to 1,038,734 GFF960 Position (kb) 1034 1035 1036 1037 1038Strain fitness (log2 ratio) -1 0 1 2at 1034.779 kb on - strandat 1035.737 kb on - strand, within GFF959at 1035.770 kb on - strand, within GFF959at 1035.901 kb on + strand, within GFF959at 1036.091 kb on - strand, within GFF959at 1036.111 kb on + strand, within GFF959at 1036.111 kb on + strand, within GFF959at 1036.112 kb on - strand, within GFF959at 1036.112 kb on - strand, within GFF959at 1036.112 kb on - strand, within GFF959at 1036.112 kb on - strand, within GFF959at 1037.206 kb on + strandat 1037.211 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
1,034,779 - +0.3
1,035,737 - GFF959 0.38 +0.5
1,035,770 - GFF959 0.40 -1.4
1,035,901 + GFF959 0.46 +0.5
1,036,091 - GFF959 0.54 +0.7
1,036,111 + GFF959 0.55 +0.2
1,036,111 + GFF959 0.55 -1.0
1,036,112 - GFF959 0.55 -0.9
1,036,112 - GFF959 0.55 -1.4
1,036,112 - GFF959 0.55 +0.8
1,036,112 - GFF959 0.55 +1.8
1,037,206 + +0.7
1,037,211 + -0.3

Or see this region's nucleotide sequence