Strain Fitness in Xanthobacter sp. DMC5 around GFF942

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF941 and GFF942 overlap by 8 nucleotidesGFF942 and GFF943 overlap by 38 nucleotides GFF941 - L-lysine 2,3-aminomutase, at 1,013,864 to 1,014,958 GFF941 GFF942 - hypothetical protein, at 1,014,951 to 1,015,817 GFF942 GFF943 - hypothetical protein, at 1,015,780 to 1,016,985 GFF943 Position (kb) 1014 1015 1016Strain fitness (log2 ratio) -1 0 1at 1014.012 kb on + strand, within GFF941at 1014.174 kb on - strand, within GFF941at 1014.218 kb on + strand, within GFF941at 1014.219 kb on - strand, within GFF941at 1014.518 kb on + strand, within GFF941at 1014.704 kb on + strand, within GFF941at 1014.705 kb on - strand, within GFF941at 1014.821 kb on + strand, within GFF941at 1014.821 kb on + strand, within GFF941at 1014.822 kb on - strand, within GFF941at 1014.855 kb on + strandat 1015.152 kb on + strand, within GFF942at 1015.153 kb on - strand, within GFF942at 1015.153 kb on - strand, within GFF942at 1015.153 kb on - strand, within GFF942at 1015.153 kb on - strand, within GFF942at 1015.197 kb on + strand, within GFF942at 1015.383 kb on + strand, within GFF942at 1015.635 kb on + strand, within GFF942at 1015.635 kb on + strand, within GFF942at 1015.635 kb on + strand, within GFF942at 1015.937 kb on + strand, within GFF943at 1015.938 kb on - strand, within GFF943at 1016.208 kb on + strand, within GFF943at 1016.208 kb on + strand, within GFF943at 1016.209 kb on - strand, within GFF943at 1016.244 kb on + strand, within GFF943at 1016.291 kb on + strand, within GFF943at 1016.291 kb on + strand, within GFF943at 1016.313 kb on + strand, within GFF943at 1016.313 kb on + strand, within GFF943

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,014,012 + GFF941 0.14 +0.2
1,014,174 - GFF941 0.28 -0.3
1,014,218 + GFF941 0.32 +1.5
1,014,219 - GFF941 0.32 -0.5
1,014,518 + GFF941 0.60 -1.1
1,014,704 + GFF941 0.77 -1.0
1,014,705 - GFF941 0.77 +0.7
1,014,821 + GFF941 0.87 -0.1
1,014,821 + GFF941 0.87 -0.5
1,014,822 - GFF941 0.87 -0.5
1,014,855 + -1.5
1,015,152 + GFF942 0.23 +1.7
1,015,153 - GFF942 0.23 +0.7
1,015,153 - GFF942 0.23 +0.7
1,015,153 - GFF942 0.23 -1.7
1,015,153 - GFF942 0.23 -0.2
1,015,197 + GFF942 0.28 +0.0
1,015,383 + GFF942 0.50 -1.0
1,015,635 + GFF942 0.79 +1.2
1,015,635 + GFF942 0.79 -0.8
1,015,635 + GFF942 0.79 -0.1
1,015,937 + GFF943 0.13 -0.5
1,015,938 - GFF943 0.13 -0.9
1,016,208 + GFF943 0.35 +0.1
1,016,208 + GFF943 0.35 +1.3
1,016,209 - GFF943 0.36 +0.9
1,016,244 + GFF943 0.38 -0.2
1,016,291 + GFF943 0.42 -0.5
1,016,291 + GFF943 0.42 -0.3
1,016,313 + GFF943 0.44 +0.3
1,016,313 + GFF943 0.44 +0.7

Or see this region's nucleotide sequence