Strain Fitness in Xanthobacter sp. DMC5 around GFF906

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF905 and GFF906 overlap by 4 nucleotidesGFF906 and GFF907 are separated by 201 nucleotides GFF905 - hypothetical protein, at 973,982 to 975,115 GFF905 GFF906 - hypothetical protein, at 975,112 to 976,770 GFF906 GFF907 - Aliphatic amidase expression-regulating protein, at 976,972 to 978,282 GFF907 Position (kb) 975 976 977Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 974.298 kb on + strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.299 kb on - strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.355 kb on + strand, within GFF905at 974.356 kb on - strand, within GFF905at 974.356 kb on - strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.427 kb on + strand, within GFF905at 974.428 kb on - strand, within GFF905at 974.428 kb on - strand, within GFF905at 974.460 kb on + strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.461 kb on - strand, within GFF905at 974.564 kb on - strand, within GFF905at 974.644 kb on - strand, within GFF905at 974.644 kb on - strand, within GFF905at 974.775 kb on + strand, within GFF905at 974.775 kb on + strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.776 kb on - strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.817 kb on + strand, within GFF905at 974.818 kb on - strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.850 kb on + strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.851 kb on - strand, within GFF905at 974.916 kb on + strand, within GFF905at 974.955 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.964 kb on + strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.965 kb on - strand, within GFF905at 974.988 kb on + strand, within GFF905at 974.989 kb on - strand, within GFF905at 974.989 kb on - strand, within GFF905at 974.989 kb on - strand, within GFF905at 975.329 kb on + strand, within GFF906at 975.329 kb on + strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.330 kb on - strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.491 kb on + strand, within GFF906at 975.492 kb on - strand, within GFF906at 975.575 kb on + strand, within GFF906at 975.575 kb on + strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.576 kb on - strand, within GFF906at 975.728 kb on + strand, within GFF906at 975.827 kb on + strand, within GFF906at 975.828 kb on - strand, within GFF906at 975.828 kb on - strand, within GFF906at 975.828 kb on - strand, within GFF906at 975.872 kb on + strand, within GFF906at 975.872 kb on + strand, within GFF906at 975.872 kb on + strand, within GFF906at 975.873 kb on - strand, within GFF906at 975.873 kb on - strand, within GFF906at 975.928 kb on + strand, within GFF906at 975.986 kb on + strand, within GFF906at 975.987 kb on - strand, within GFF906at 975.987 kb on - strand, within GFF906at 976.500 kb on - strand, within GFF906at 976.595 kb on + strand, within GFF906at 976.595 kb on + strand, within GFF906at 976.595 kb on + strand, within GFF906at 976.596 kb on - strand, within GFF906at 976.596 kb on - strand, within GFF906at 976.596 kb on - strand, within GFF906at 976.596 kb on - strand, within GFF906at 976.747 kb on + strandat 976.879 kb on + strandat 976.879 kb on + strandat 976.894 kb on + strandat 976.973 kb on + strandat 976.973 kb on + strandat 976.974 kb on - strandat 977.030 kb on + strandat 977.072 kb on + strandat 977.309 kb on + strand, within GFF907at 977.310 kb on - strand, within GFF907at 977.310 kb on - strand, within GFF907at 977.310 kb on - strand, within GFF907at 977.310 kb on - strand, within GFF907at 977.414 kb on + strand, within GFF907at 977.414 kb on + strand, within GFF907at 977.414 kb on + strand, within GFF907at 977.415 kb on - strand, within GFF907at 977.415 kb on - strand, within GFF907at 977.415 kb on - strand, within GFF907at 977.540 kb on + strand, within GFF907at 977.541 kb on - strand, within GFF907at 977.660 kb on + strand, within GFF907at 977.660 kb on + strand, within GFF907at 977.661 kb on - strand, within GFF907at 977.744 kb on + strand, within GFF907at 977.744 kb on + strand, within GFF907at 977.744 kb on + strand, within GFF907at 977.745 kb on - strand, within GFF907

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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974,298 + GFF905 0.28 -0.2
974,299 - GFF905 0.28 +1.4
974,299 - GFF905 0.28 +0.7
974,299 - GFF905 0.28 +0.7
974,299 - GFF905 0.28 -1.9
974,355 + GFF905 0.33 -0.8
974,355 + GFF905 0.33 +0.2
974,355 + GFF905 0.33 -0.2
974,355 + GFF905 0.33 +0.9
974,355 + GFF905 0.33 -0.8
974,355 + GFF905 0.33 +0.1
974,355 + GFF905 0.33 -1.7
974,355 + GFF905 0.33 +1.0
974,355 + GFF905 0.33 +0.3
974,356 - GFF905 0.33 -0.6
974,356 - GFF905 0.33 -0.3
974,427 + GFF905 0.39 +0.9
974,427 + GFF905 0.39 -0.1
974,427 + GFF905 0.39 -0.1
974,427 + GFF905 0.39 -0.2
974,428 - GFF905 0.39 -0.5
974,428 - GFF905 0.39 -1.9
974,460 + GFF905 0.42 +0.2
974,461 - GFF905 0.42 -0.4
974,461 - GFF905 0.42 +1.0
974,461 - GFF905 0.42 +0.7
974,461 - GFF905 0.42 -0.6
974,564 - GFF905 0.51 -0.2
974,644 - GFF905 0.58 +0.6
974,644 - GFF905 0.58 -0.8
974,775 + GFF905 0.70 -0.1
974,775 + GFF905 0.70 +0.4
974,776 - GFF905 0.70 -1.5
974,776 - GFF905 0.70 -0.7
974,776 - GFF905 0.70 -0.0
974,776 - GFF905 0.70 -1.3
974,776 - GFF905 0.70 +0.7
974,817 + GFF905 0.74 +0.4
974,817 + GFF905 0.74 -0.2
974,817 + GFF905 0.74 -0.2
974,817 + GFF905 0.74 +0.6
974,818 - GFF905 0.74 -0.7
974,850 + GFF905 0.77 +0.6
974,850 + GFF905 0.77 +1.2
974,850 + GFF905 0.77 +2.0
974,850 + GFF905 0.77 +0.8
974,850 + GFF905 0.77 +0.0
974,850 + GFF905 0.77 -0.1
974,850 + GFF905 0.77 +0.3
974,850 + GFF905 0.77 +0.2
974,850 + GFF905 0.77 +1.3
974,851 - GFF905 0.77 +0.2
974,851 - GFF905 0.77 +1.0
974,851 - GFF905 0.77 -0.1
974,851 - GFF905 0.77 +0.7
974,851 - GFF905 0.77 +0.8
974,851 - GFF905 0.77 +1.0
974,851 - GFF905 0.77 -0.3
974,851 - GFF905 0.77 +0.4
974,916 + GFF905 0.82 +1.1
974,955 + GFF905 0.86 +0.5
974,964 + GFF905 0.87 +0.0
974,964 + GFF905 0.87 +0.4
974,964 + GFF905 0.87 +1.4
974,964 + GFF905 0.87 +1.1
974,964 + GFF905 0.87 +0.4
974,965 - GFF905 0.87 -0.1
974,965 - GFF905 0.87 +0.1
974,965 - GFF905 0.87 +0.0
974,965 - GFF905 0.87 -0.5
974,988 + GFF905 0.89 -0.6
974,989 - GFF905 0.89 -0.1
974,989 - GFF905 0.89 -0.6
974,989 - GFF905 0.89 +0.3
975,329 + GFF906 0.13 +0.0
975,329 + GFF906 0.13 -0.2
975,330 - GFF906 0.13 +0.6
975,330 - GFF906 0.13 +1.0
975,330 - GFF906 0.13 -0.2
975,330 - GFF906 0.13 -1.8
975,330 - GFF906 0.13 +0.3
975,330 - GFF906 0.13 -0.1
975,491 + GFF906 0.23 +1.1
975,491 + GFF906 0.23 -0.3
975,491 + GFF906 0.23 +0.2
975,491 + GFF906 0.23 -1.4
975,492 - GFF906 0.23 -1.0
975,575 + GFF906 0.28 +0.6
975,575 + GFF906 0.28 +0.5
975,576 - GFF906 0.28 +0.7
975,576 - GFF906 0.28 +0.7
975,576 - GFF906 0.28 +0.3
975,576 - GFF906 0.28 -0.3
975,576 - GFF906 0.28 -0.6
975,728 + GFF906 0.37 -1.0
975,827 + GFF906 0.43 +1.2
975,828 - GFF906 0.43 -0.4
975,828 - GFF906 0.43 -0.3
975,828 - GFF906 0.43 -1.1
975,872 + GFF906 0.46 -0.7
975,872 + GFF906 0.46 -1.0
975,872 + GFF906 0.46 +0.0
975,873 - GFF906 0.46 -0.3
975,873 - GFF906 0.46 -0.8
975,928 + GFF906 0.49 +0.2
975,986 + GFF906 0.53 +0.4
975,987 - GFF906 0.53 +0.3
975,987 - GFF906 0.53 +0.1
976,500 - GFF906 0.84 +0.3
976,595 + GFF906 0.89 +0.6
976,595 + GFF906 0.89 +0.0
976,595 + GFF906 0.89 -0.1
976,596 - GFF906 0.89 -0.0
976,596 - GFF906 0.89 +0.6
976,596 - GFF906 0.89 +0.3
976,596 - GFF906 0.89 +0.4
976,747 + -0.2
976,879 + -0.3
976,879 + +0.0
976,894 + +0.1
976,973 + -0.4
976,973 + +0.3
976,974 - -1.2
977,030 + -0.3
977,072 + +0.8
977,309 + GFF907 0.26 -0.0
977,310 - GFF907 0.26 -1.0
977,310 - GFF907 0.26 -0.8
977,310 - GFF907 0.26 -0.6
977,310 - GFF907 0.26 +0.6
977,414 + GFF907 0.34 +1.0
977,414 + GFF907 0.34 +0.7
977,414 + GFF907 0.34 +0.0
977,415 - GFF907 0.34 -0.8
977,415 - GFF907 0.34 -3.1
977,415 - GFF907 0.34 -0.7
977,540 + GFF907 0.43 +0.3
977,541 - GFF907 0.43 -0.1
977,660 + GFF907 0.52 -0.6
977,660 + GFF907 0.52 +0.6
977,661 - GFF907 0.53 -0.0
977,744 + GFF907 0.59 +0.3
977,744 + GFF907 0.59 -0.9
977,744 + GFF907 0.59 +0.6
977,745 - GFF907 0.59 +0.6

Or see this region's nucleotide sequence